BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZH03RM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1765 1580 0.0
>3x_Contig1765
Length = 24733
Score = 1580 bits (797), Expect = 0.0
Identities = 861/877 (98%), Gaps = 4/877 (0%)
Strand = Plus / Plus
Query: 50 cctagttctcgcgcacatgggtctaattcatctaatt-aagtaattggggtttgacaatt 108
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 22300 cctagttctcgcgcacatgggtctaattcatctaattcaagtaattggggtttgacaatt 22359
Query: 109 attttggcccgtttttccttgctatcagctaaatgtgacttaacaatcgtggcactatgt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22360 attttggcccgtttttccttgctatcagctaaatgtgacttaacaatcgtggcactatgt 22419
Query: 169 tcaaaatcatttcccatattcagtaaccgcagggaatctattctcttgtagagttccttc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22420 tcaaaatcatttcccatattcagtaaccgcagggaatctattctcttgtagagttccttc 22479
Query: 229 tttagtttgaaaacaccattatcttcgagccctttgggctcaatgtacgtagaaacttct 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22480 tttagtttgaaaacaccattatcttcgagccctttgggctcaatgtacgtagaaacttct 22539
Query: 289 tcgagaactgtatcaaattgggaaacactttcagtaaggtaatcgggtatatcgttcaat 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22540 tcgagaactgtatcaaattgggaaacactttcagtaaggtaatcgggtatatcgttcaat 22599
Query: 349 aagtcagtgtatgatagtggttcagcgtatagtttataaataatggcattcttaatgttg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22600 aagtcagtgtatgatagtggttcagcgtatagtttataaataatggcattcttaatgttg 22659
Query: 409 tacaattgtgtttcttccagggtatcgaactttttataaaagtctctttccaccaatatc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22660 tacaattgtgtttcttccagggtatcgaactttttataaaagtctctttccaccaatatc 22719
Query: 469 tgatataggaatgcaacgaattgttgaataatcgacgatattttatcatcgtacactgtc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22720 tgatataggaatgcaacgaattgttgaataatcgacgatattttatcatcgtacactgtc 22779
Query: 529 tctgtcgagggaacacttccatcaaaccagtcaagtaattcccacctatctaacatgtta 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22780 tctgtcgagggaacacttccatcaaaccagtcaagtaattcccacctatctaacatgtta 22839
Query: 589 tagatgactcttttgaaatcgtttttttcaattagaaacgccaattgattaagttgtatg 648
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22840 tagatgactctttgaaaatcgtttttttcaattagaaacgccaattgattaagttgtatg 22899
Query: 649 tctctgctataggagctcatttcaagattgttcttgttatatgctgactggtgaagaact 708
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 22900 tctctgctataggagctcatttcaggattgttcttgtaatatgctgactggtgaagaact 22959
Query: 709 gacataccatttctaacccaaaatcctatatcgatttgcgaacat-agacgacagatctt 767
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 22960 gacataccatttctaacccaaaatcctatatcgatttgcgaacataagacgacagatctc 23019
Query: 768 caagcaaaatcccgaataactagatagtctttggattgagataaaacttgatttgacacc 827
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 23020 aaagcaaaatccgaaataactagatagtctttggattgagataaaacttgaattgacacc 23079
Query: 828 tgtaaagggacatgctgcacaaggaaag-aaacaaagtttgaacgggattcataaatgaa 886
||||| || ||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 23080 tgtaagggaacatgctgcacaaggaaagaaaacaaagtatgaacgggattcataaatgaa 23139
Query: 887 actcgttctttgctgatttggaa-tttatgatttcaa 922
||||||||||||||||||||||| |||||||||||||
Sbjct: 23140 actcgttctttgctgatttggaattttatgatttcaa 23176
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7372
Number of Sequences: 1807
Number of extensions: 7372
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)