BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZH04FM1.SCF screened BAC_end
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1563 1233 0.0
>3x_Contig1563
Length = 10839
Score = 1233 bits (622), Expect = 0.0
Identities = 686/702 (97%), Gaps = 4/702 (0%)
Strand = Plus / Minus
Query: 87 tgaatgacacctactctttgatttcatattggatttttcactatataagacaactggggt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5045 tgaatgacacctactctttgatttcatattggatttttcactatataagacaactggggt 4986
Query: 147 gatatatccagagaaccaattaggtattggaatagtttatacctgattcactgaaagatg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4985 gatatatccagagaaccaattaggtattggaatagtttatacctgattcactgaaagatg 4926
Query: 207 gctgacgttaagattcaaactctaccaaccgactttagggccaaccattatgagattgaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4925 gctgacgttaagattcaaactctaccaaccgactttagggccaaccattatgagattgaa 4866
Query: 267 ttgagtgagttagatgctgagcacaattcatttatcggatccgtgcgtattattatgtcc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4865 ttgagtgagttagatgctgagcacaattcatttatcggatccgtgcgtattattatgtcc 4806
Query: 327 actgttaatgccaatgacatgatttcattgaatatgagggacattgagatcgtttctgcg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4805 actgttaatgccaatgacatgatttcattgaatatgagggacattgagatcgtttctgcg 4746
Query: 387 gtggttgaactgaaagaggggtctgtgtctttgggaatgaaggaccatagtttcgattta 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4745 gtggttgaactgaaagaggggtctgtgtctttgggaatgaaggaccatagtttcgattta 4686
Query: 447 gagaacgatgttgtttcc-ttgaaatttccggagagtatatctgatgatgaattcgtgtt 505
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 4685 gagaacgatgttgtttcctttgaaatttccggagagtatatctgatgatgaattcgtgtt 4626
Query: 506 gaagatcgattataagggtatgattcagactaatatgtctggattctaccgttcagatta 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4625 gaagatcgattataagggtatgattcagactaatatgtctggattctaccgttcagatta 4566
Query: 566 tactgatttttgtaccggtgaaaataaggtaatgttttccactcagttcgaggcaacgga 625
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4565 tactgattttgttaccggtgaaaataaggtaatgttttccactcagttcgaggcaacgga 4506
Query: 626 tgctcgcagagcattcccatgtttcgatgaaccctc-ttgaaagcaacctttgacatatt 684
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 4505 tgctcgcagagcattcccatgtttcgatgaaccctctttgaaggcaacctttgacatatg 4446
Query: 685 cattattgcgcatgagaaatacactgtgttaactaatttgcctttgaagtgcacgaagaa 744
|||||| |||||||||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct: 4445 cattatcgcgcatgagaaatacactgtgttagctaatatgcctctgaagtgcacgaagaa 4386
Query: 745 tttggccgaattcagacccaaatttcttatatattccatact 786
||| | ||| ||||| |||||||||||||| ||||||||||
Sbjct: 4385 attgacagaa-tcaga-ccaaatttcttatagattccatact 4346
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6439
Number of Sequences: 1807
Number of extensions: 6439
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)