BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZH04RM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1646 1265 0.0
>3x_Contig1646
Length = 14145
Score = 1265 bits (638), Expect = 0.0
Identities = 736/758 (97%), Gaps = 8/758 (1%)
Strand = Plus / Minus
Query: 46 gcttctgacacgaaccaagtaatgctatgcatattttcattcgaggtgactcgaatctat 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10748 gcttctgacacgaaccaagtaatgctatgcatattttcattcgaggtgactcgaatctat 10689
Query: 106 cattttttaatcatctttaacgcaaacctcgattaaaccttttcgagataacagatagag 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10688 cattttttaatcatctttaacgcaaacctcgattaaaccttttcgagataacagatagag 10629
Query: 166 atagtaaaatattcctaatcgggaaaccattgataaaactatcaacgcattgtcacctcg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10628 atagtaaaatattcctaatcgggaaaccattgataaaactatcaacgcattgtcacctcg 10569
Query: 226 attaaggaaagagacagaacggtgcttagctgagtaatgttgcttctcgctggaccgcga 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10568 attaaggaaagagacagaacggtgcttagctgagtaatgttgcttctcgctggaccgcga 10509
Query: 286 ttaatgcggaacatacccctggtaggctggcagattcaaccccaaaccaagaactagtcc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10508 ttaatgcggaacatacccctggtaggctggcagattcaaccccaaaccaagaactagtcc 10449
Query: 346 cctaattttttatgaaatacacctcgattatgaagattaaacttagtttcatagatgatg 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10448 cctaattttttatgaaatacacctcgattatgaagattaaacttagtttcatagatgatg 10389
Query: 406 atccagatttctgactctccggtcataacccaaatcatattctacatcgtagatgtggta 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10388 atccagatttctgactctccggtcataacccaaatcatattctacatcgtagatgtggta 10329
Query: 466 gcttttgggagaggatcaagtaatcgatgattggtttgttccaaatcatacgcgatgaac 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10328 gcttttgggagaggatcaagtaatcgatgattggtttgttccaaatcatacgcgatgaac 10269
Query: 526 ataatgctcaggagttaggaatggtggccatttcagcggagatctttccaatggagatga 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10268 ataatgctcaggagttaggaatggtggccatttcagcggagatctttccaatggagatga 10209
Query: 586 aagatgaagaagatccaagcggtagctactgacttttttaagttccgttagaattagggg 645
|||| |||||||| |||||||||||||||||||||||||||||||||| || ||| |||
Sbjct: 10208 aagaagaagaagaaccaagcggtagctactgacttttttaagttccgtaggatttaaggg 10149
Query: 646 aggttgttgctaaggtttggt-atatcatcatatatataagga-caaagagcgttt-aca 702
||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||| |||
Sbjct: 10148 aggttgttgctaaggtttggtaatatcatcatataaataaggaccaaagagcgtttaaca 10089
Query: 703 tccgttgtattgtctgcaa-tttttttatcaac-tggtcaa-tatatgaatggaacatat 759
|| ||||||||||||||| ||||||||||||| ||||||| |||||||||| |||||||
Sbjct: 10088 tcgtttgtattgtctgcaattttttttatcaacttggtcaattatatgaatgtaacatat 10029
Query: 760 cg-agtc-aaccgatacactgattaacattaggtactt 795
|| |||| ||| ||||||||| | |||||||||||||
Sbjct: 10028 cgaagtcaaacagatacactgtatcacattaggtactt 9991
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6773
Number of Sequences: 1807
Number of extensions: 6773
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)