BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC34ZH05FM1.SCF screened BAC_end
         (946 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1791                                                        1269   0.0  

>3x_Contig1791 
          Length = 39945

 Score = 1269 bits (640), Expect = 0.0
 Identities = 677/688 (98%), Gaps = 1/688 (0%)
 Strand = Plus / Plus

                                                                        
Query: 91   tctttgctgttgagaaagatcaccgtgaatggcagcaacatcgtaaccgttgtatttcaa 150
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6329 tctttgctgttgagaaagatcaccgtgaatggcagcaacatcgtaaccgttgtatttcaa 6388

                                                                        
Query: 151  gtttctttcaacacgagaggcttcctttttgtacaaggcaaatatcaaaactttgtcgtt 210
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6389 gtttctttcaacacgagaggcttcctttttgtacaaggcaaatatcaaaactttgtcgtt 6448

                                                                        
Query: 211  ctttgttgggcctgaatggtacttcttcaacagttccaacagttttttttcctttctgaa 270
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6449 ctttgttgggcctgaatggtacttcttcaacagttccaacagttttttttcctttctgaa 6508

                                                                        
Query: 271  cggatccacaacttccacgatctgagtaattcttttgtttgctgacagttcatctctgtt 330
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6509 cggatccacaacttccacgatctgagtaattcttttgtttgctgacagttcatctctgtt 6568

                                                                        
Query: 331  accaatagacactttaaccggttcactcatgaaacttgaagcaagttcacgaacttcttt 390
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6569 accaatagacactttaaccggttcactcatgaaacttgaagcaagttcacgaacttcttt 6628

                                                                        
Query: 391  tggccatgtcgcggtaaacatcaacgtttgtctagaggtggatcttgtttgtctaatgat 450
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6629 tggccatgtcgcggtaaacatcaacgtttgtctagaggtggatcttgtttgtctaatgat 6688

                                                                        
Query: 451  ttttttgatatcttcctcaaaacctttttccaacattctgtcagcttcatccaagaccag 510
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6689 ttttttgatatcttcctcaaaacctttttccaacattctgtcagcttcatccaagaccag 6748

                                                                        
Query: 511  gtagttaacatgactcaaatcaacagatccttcctctattagatccaacagtctacctgg 570
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 6749 gtagttaacatgactcaaatcaacagagccttcctctattagatccaacagtctacctgg 6808

                                                                        
Query: 571  agtagcaacaacgacttgggatctcctcagatcttctctttgctgatcctttggaacacc 630
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6809 agtagcaacaacgacttgggatctcctcagatcttctctttgctgatcctttggaacacc 6868

                                                                        
Query: 631  accgtatacgcaacaagatcttaaaccacacgcgttagtaagaacaatcaaattatcgta 690
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 6869 accgtatacgcaacaagatcttaaaccacacgcgtcagtaagaacaatcaaattatcgta 6928

                                                                        
Query: 691  aatttgaaagccaatttctctattttggtgagataacaagtaccttgacggaacttgact 750
            ||||||| || | | |||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 6929 aatttgagaggccaattctcta-gttggtgagataacaagtaccttgacggaacttgact 6987

                                        
Query: 751  tgtcttcttatgtgacaatgttggtgat 778
            ||||| || |||||||||||||| ||||
Sbjct: 6988 tgtctcctgatgtgacaatgttgttgat 7015


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8233
Number of Sequences: 1807
Number of extensions: 8233
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)