BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZH05RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1791 1324 0.0
>3x_Contig1791
Length = 39945
Score = 1324 bits (668), Expect = 0.0
Identities = 730/744 (98%), Gaps = 5/744 (0%)
Strand = Plus / Minus
Query: 46 tgctgcttctgcctctcaatctgatattgatgaatttttgaaggaaaatgaggttacagt 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7280 tgctgcttctgcctctcaatctgatattgatgaatttttgaaggaaaatgaggttacagt 7221
Query: 106 tagcgacccatcaggttccaatattgtaccatatttagacttttccca-gtgtcgtttat 164
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 7220 tagcgacccatcaggttccaatattgtaccatatttagacttttcccaagtgtcgtttat 7161
Query: 165 tgatcagattcaaaaggaaatttctaagttcccaaaaccaactccaattcaagctgtttc 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7160 tgatcagattcaaaaggaaatttctaagttcccaaaaccaactccaattcaagctgtttc 7101
Query: 225 ctggccatatctattagctggtaaggatgttatcggtatcgctgaaactggttcgggtaa 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7100 ctggccatatctattagctggtaaggatgttatcggtatcgctgaaactggttcgggtaa 7041
Query: 285 gacttttgctttcggtgttccagctatcaacaacattgtcacatcaggagacaagtcaag 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7040 gacttttgctttcggtgttccagctatcaacaacattgtcacatcaggagacaagtcaag 6981
Query: 345 ttccgtcaaggtacttgttatctcaccaactagagaattggcctctcaaatttacgataa 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6980 ttccgtcaaggtacttgttatctcaccaactagagaattggcctctcaaatttacgataa 6921
Query: 405 tttgattgttcttactgacgcgtgtggtttaagatcttgttgcgtatacggtggtgttcc 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6920 tttgattgttcttactgacgcgtgtggtttaagatcttgttgcgtatacggtggtgttcc 6861
Query: 465 aaaggatcagcaaagagaagatctgaggagatcccaagtcgttgttgctactccaggtag 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6860 aaaggatcagcaaagagaagatctgaggagatcccaagtcgttgttgctactccaggtag 6801
Query: 525 actgttggatctaatagaggaaggctctgttgatttgagtcatgttaactacctggtctt 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6800 actgttggatctaatagaggaaggctctgttgatttgagtcatgttaactacctggtctt 6741
Query: 585 ggatgaagctgacagaatgtttggataaagggtttgaggaagatatcaaaaaaatcatta 644
||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 6740 ggatgaagctgacagaatg-ttggaaaaaggttttgaggaagatatcaaaaaaatcatta 6682
Query: 645 gacaaacaagatccacctctagacaaacgttgatgtttaccgcgacatggccaaaaagaa 704
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 6681 gacaaacaagatccacctctagacaaacgttgatgtttaccgcgacatggcc-aaaagaa 6623
Query: 705 gttcgtgaacttgccttcaagtttcatgagtgaaacggttataatggtctattggtacca 764
||||||||||||| |||||||||||||||||||| |||||| || ||||||||||| ||
Sbjct: 6622 gttcgtgaacttg-cttcaagtttcatgagtgaaccggtta-aagtgtctattggtaaca 6565
Query: 765 gaaatgacctgtcagcatacaaaa 788
|| |||| ||||||||| ||||||
Sbjct: 6564 gagatgaactgtcagcaaacaaaa 6541
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7464
Number of Sequences: 1807
Number of extensions: 7464
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)