BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZH06FM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig763 777 0.0
>3x_Contig763
Length = 2933
Score = 777 bits (392), Expect = 0.0
Identities = 467/483 (96%), Gaps = 7/483 (1%)
Strand = Plus / Minus
Query: 356 tgctagtgattaatcaaaatttggttcctttaccatgaccgtcaataatgaaaagtattg 415
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 2933 tgctagtgattaatcaaaatttggttcctttcccatgcccgtcaataatgaaaagtattg 2874
Query: 416 tcgaattaacaaaattgctggcaataccaaataatgatatcagtacagaacgaaactaaa 475
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 2873 tcgaattaacaaaattgctggaaataccaaataatgatatcagtacagaacgaaactaaa 2814
Query: 476 ggaagataaaaacactacattgtaaaacttaaaaacataaagccaaaaatattctgaaat 535
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2813 ggaagataaaaacactacattgtaaaagttaaaaacataaagccaaaaatattctgaaat 2754
Query: 536 atctggcgatgtaataatactaaacaattactcagaaagtaataattctacaaacatact 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2753 atctggcgatgtaataatactaaacaattactcagaaagtaataattctacaaacatact 2694
Query: 596 aatcaatttctgaagcccaaataaaagtaaaaataataacaaaatagaagtcatgtcaat 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2693 aatcaatttctgaagcccaaataaaagtaaaaataataacaaaatagaagtcatgtcaat 2634
Query: 656 agaagcttttgattgatcacccttttttgattttccttatgctaattgntcttaaatagt 715
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 2633 agaagcttttgattgatcaccc-tttttgattttccttatgctaattgttcttaaatagt 2575
Query: 716 tttgtatttggattcatatttgtgtattcatattacgacaatttta-ttcgagatcttc- 773
|||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 2574 tttgtatttgtattcatatttgtgtattcatattacgacaaatttagttcgagatcttca 2515
Query: 774 atagcag-aaatattgac-aacttatg-agtgacgaagaaatg-tactattttgtctacc 829
||||||| |||||||||| |||||||| |||||||| |||||| |||||||||||||| |
Sbjct: 2514 atagcagaaaatattgacaaacttatgaagtgacgaggaaatgttactattttgtctaac 2455
Query: 830 taa 832
|||
Sbjct: 2454 taa 2452
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8497
Number of Sequences: 1807
Number of extensions: 8497
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)