BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZH06RM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1640 1451 0.0
>3x_Contig1640
Length = 15521
Score = 1451 bits (732), Expect = 0.0
Identities = 852/886 (96%), Gaps = 5/886 (0%)
Strand = Plus / Plus
Query: 46 cttatgatggataaggatattatagaagctatgcagaaattcaaatcagagatggacaaa 105
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2023 cttatgatggataaggatattagagaagctatgcagaaattcaaatcagagatggacaaa 2082
Query: 106 tctggcataaatttgggtcctgaccaactagggcctttgatgaaagttctaggaatcgaa 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2083 tctggcataaatttgggtcctgaccaactagggcctttgatgaaagttctaggaatcgaa 2142
Query: 166 aagaagtaatattgttcaatgacttcctgcatctcacttcctgattattcactggaagaa 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2143 aagaagtaatattgttcaatgacttcctgcatctcacttcctgattattcactggaagaa 2202
Query: 226 tcatcaggcatgttgataatagactgtctgtttgtatactttatgtcaatagatatctat 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2203 tcatcaggcatgttgataatagactgtctgtttgtatactttatgtcaatagatatctat 2262
Query: 286 actatacttttacaacaaatatgtatattttatgaaattatttcattgcaggattgattg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2263 actatacttttacaacaaatatgtatattttatgaaattatttcattgcaggattgattg 2322
Query: 346 gcttggggttgtgatatattgaatgtaagtggaaatataccttgcactttggacatgatt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2323 gcttggggttgtgatatattgaatgtaagtggaaatataccttgcactttggacatgatt 2382
Query: 406 cttagtttaatgaaatatcctttttttatttggccaagtaagataataaatccacctttg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2383 cttagtttaatgaaatatcctttttttatttggccaagtaagataataaatccacctttg 2442
Query: 466 tgacaatatggactgggttcagaccctcagtaatgatagctgctgagttcttttcaaaga 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2443 tgacaatatggactgggttcagaccctcagtaatgatagctgctgagttcttttcaaaga 2502
Query: 526 aagagttcaactcagacatagttgtattgacatcgaaacgaacaaatatcttcttatgag 585
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2503 aagagttcaactcagacaaagttgtattgacatcgaaacgaacaaatatcttcttatgag 2562
Query: 586 acttgtcngcgttataggaagagatgtcatcaaagttattcaacttacggaaatcaaaga 645
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2563 acttgtcggcgttataggaagagatgtcatcaaagttattcaacttacggaaatcaaaga 2622
Query: 646 acagacttttaatgctagaaacatccttggaagtggattattttctttaatatttgagaa 705
||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct: 2623 acagacttttaatgctagaaacatccttggaagtgga-taatttctttaataattgagac 2681
Query: 706 caagttacccaatcgcacaactttccattctttgnttacacaagtagttgatccgaacga 765
|||||||| || ||||||||||||||| ||||| | ||||| ||||||||| |||||||
Sbjct: 2682 aaagttaccaaaccgcacaactttccatcctttgttaacacaggtagttgat-cgaacga 2740
Query: 766 tttatctcttaaaatcttgatgacagtagcaacagaagccgtcttcttcaacagaaaccc 825
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 2741 gttatctcttaaaatcttgatgacagtagcaacagaag-cgtcttcttcaacagagacca 2799
Query: 826 ctgttttcaggttcaaattcctcaccgggggcattttcaaaaacatcggtttctttttgc 885
||| ||||| |||||||| | ||| ||| ||||| |||||||||||||||||||||||||
Sbjct: 2800 ctggtttcaagttcaaatccttca-cggtggcatcttcaaaaacatcggtttctttttgc 2858
Query: 886 caatttggaatgggcatggcatcattccattaggccgttggtcttt 931
| ||||| ||| |||||||||| ||| ||||||||||||||||
Sbjct: 2859 acaattggagtggcaatggcatcatccca-taggccgttggtcttt 2903
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8911
Number of Sequences: 1807
Number of extensions: 8911
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)