BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZH07FM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1281 1211 0.0
>3x_Contig1281
Length = 7825
Score = 1211 bits (611), Expect = 0.0
Identities = 733/767 (95%), Gaps = 5/767 (0%)
Strand = Plus / Plus
Query: 86 gagatatccctgttaagagatagcggaaacgatatgaacaaagtcaccaatgtgataatg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3982 gagatatccctgttaagagatagcggaaacgatatgaacaaagtcaccaatgtgataatg 4041
Query: 146 acattccgatgaaaaagatctgtatgagaagggaaaaaggcgctcaaaacatgaggtatt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4042 acattccgatgaaaaagatctgtatgagaagggaaaaaggcgctcaaaacatgaggtatt 4101
Query: 206 gaatctccaatgataatgcaaaacccaacgcaaccaccaaatgcaaataggccgttggat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4102 gaatctccaatgataatgcaaaacccaacgcaaccaccaaatgcaaataggccgttggat 4161
Query: 266 actaaaatcaaaagtcctccccattgacccattgctgtttctacagatgcttgataagta 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4162 actaaaatcaaaagtcctccccattgacccattgctgtttctacagatgcttgataagta 4221
Query: 326 ctcttaccggttaatttcaaattgatcacaatcagacgaatggtccaatcaaccagtatg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4222 ctcttaccggttaatttcaaattgatcacaatcagacgaatggtccaatcaaccagtatg 4281
Query: 386 gacattaatatggtcgcaaataatccgccgatgattccgcaatttttcatcgcaaaaggt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4282 gacattaatatggtcgcaaataatccgccgatgattccgcaatttttcatcgcaaaaggt 4341
Query: 446 tgccctatcactcctgatcctaaaatactattcgccatgttcatgaaagccatgtacctg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4342 tgccctatcactcctgatcctaaaatactattcgccatgttcatgaaagccatgtacctg 4401
Query: 506 ttagattttgcctcattagataaatagatgtcatctgttaatgggtcttcttcattaaca 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4402 ttagattttgcctcattagataaatagatgtcatctgttaatgggtcttcttcattaaca 4461
Query: 566 ttaaaaatgttttggtcaactgcgctgtcagctgtcttcgcggtgtcatcaaatgacgtt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4462 ttaaaaatgttttggtcaactgcgctgtcagctgtcttcgcggtgtcatcaaatgacgtt 4521
Query: 626 aacttcagttcaaacggatttggttcattcttcgattgtttatcaaacagagctaatttt 685
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 4522 aactccagttcaaacggatttggttcattcttcgattgtttatcagacagagctagtttt 4581
Query: 686 ggcttactttttaatagcgggtttttgcatcgggattaattattaataac-aaggaagcc 744
|| ||||||||| ||||| | | |||||| | ||||||||| | | || ||| | |||
Sbjct: 4582 -gcatactttttatcagcggctatctgcatctgtattaattataattcacaaagtaggcc 4640
Query: 745 attagccggttaaactttcgtgcgcttcctttgctactacaacctttttacacccatttg 804
|| || ||||| |||| ||||||||| | ||||||||||||||||| ||||| |||| |
Sbjct: 4641 ataag-cggttcaactatcgtgcgctccgtttgctactacaaccttcttacagccatat- 4698
Query: 805 tgtttttttttaggcaagaagaaaaacttgcaaaatattaaatttgg 851
|||||| | | ||||||||||||| |||||||| ||| |||||||||
Sbjct: 4699 tgttttatctaaggcaagaagaaatacttgcaatata-taaatttgg 4744
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7428
Number of Sequences: 1807
Number of extensions: 7428
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)