BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZH07RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1452 1074 0.0
>3x_Contig1452
Length = 10057
Score = 1074 bits (542), Expect = 0.0
Identities = 712/753 (94%), Gaps = 12/753 (1%)
Strand = Plus / Minus
Query: 44 ctttaaggttgaattccagagttgtcttgtgcatttttaaattttcaagtgcaattcgat 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1672 ctttaaggttgaattccagagttgtcttgtgcatttttaaattttcaagtgcaattcgat 1613
Query: 104 aagactcttcagagtcacgtaactcctcgtcgtatgtgtcaatttcaacttcatctggta 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1612 aagactcttcagagtcacgtaactcctcgtcgtatgtgtcaatttcaacttcatctggta 1553
Query: 164 aagactccttgagtctagattcaattgaagtgatattggactctatttcatagatttgct 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1552 aagactccttgagtctagattcaattgaagtgatattggactctatttcatagatttgct 1493
Query: 224 cctctataccttggagttgattctcgtattgtatgaactcctttgtggctatgtcactat 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1492 cctctataccttggagttgattctcgtattgtatgaactcctttgtggctatgtcactat 1433
Query: 284 cgttttttatcttttttaggtccactctttttttgtctaaaatagaattgaattgagaga 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1432 cgttttttatcttttttaggtccactctttttttgtctaaaatagaattgaattgagaga 1373
Query: 344 gcaaatcgccttccaaattaaaagatacgctaactaaattggctccctcttcaagctgct 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1372 gcaaatcgccttccaaattaaaagatacgctaactaaattggctccctcttcaagctgct 1313
Query: 404 tcttgatggtttcaacatctttttttttcgtactttctgaagctttcaaaagggacaatt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1312 tcttgatggtttcaacatctttttttttcgtactttctgaagctttcaaaagggacaatt 1253
Query: 464 tggcatataagtcggagtgctgatttgctttggttatttggtggtgggatacttnctagt 523
||||||||||||||||||||||||||||||||||||||| || || ||||| | |||||
Sbjct: 1252 tggcatataagtcggagtgctgatttgctttggttattt-gttgttggataacttctagt 1194
Query: 524 tcatcttctttcgaaagattatcttgattcttcgtttttatttgagg-agaaaacgcatc 582
||||||||| ||||||| ||||||||||||||||||||| | |||| ||||| ||||||
Sbjct: 1193 tcatcttctaacgaaagaatatcttgattcttcgttttta-tagaggtagaaatcgcatc 1135
Query: 583 cac-attctcttcatatttcactgcttc-atttagactcggtattgttcagagcttc-tt 639
|| ||||||| |||| ||||||||| ||||||||||| ||||||||||||||| ||
Sbjct: 1134 aacaattctctcagtattccactgcttcaatttagactcgtaattgttcagagcttcttt 1075
Query: 640 ttcgac-tttaaatctttttc-ctaa-cctcttattcttt-atcaattccttaccttttg 695
|||||| |||||||||||||| |||| |||||||| ||| ||| |||||||| |||||
Sbjct: 1074 ttcgacttttaaatctttttcactaaccctcttatcatttaatcgattccttagcttttt 1015
Query: 696 ggtccggtccgcccacttatt-aaatggcttgaaatatatgacaattgctggttcttttt 754
|||| |||||||| |||||| |||| |||||||||||||||||||||||| | ||||||
Sbjct: 1014 ggtctggtccgccagcttattcaaatcgcttgaaatatatgacaattgctgttccttttt 955
Query: 755 cgcaaacaaatttc-taaaactgataatttctc 786
||||||| |||||| ||||||||||||||||||
Sbjct: 954 cgcaaacgaatttcgtaaaactgataatttctc 922
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8732
Number of Sequences: 1807
Number of extensions: 8732
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)