BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZH08FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1724 1296 0.0
>3x_Contig1724
Length = 20938
Score = 1296 bits (654), Expect = 0.0
Identities = 710/721 (98%), Gaps = 6/721 (0%)
Strand = Plus / Minus
Query: 87 tgccaaaattgataatgggtctgtaaacttcaagaacacgacatctcttttggaaaagaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9068 tgccaaaattgataatgggtctgtaaacttcaagaacacgacatctcttttggaaaagaa 9009
Query: 147 gtgatgcctatgtcaggcagctgatataacgaagttccgctttaatataatattccatca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9008 gtgatgcctatgtcaggcagctgatataacgaagttccgctttaatataatattccatca 8949
Query: 207 caaaatacccgaataagagtatatacaaaaaaaaagattacgtacagtaacatccagaaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8948 caaaatacccgaataagagtatatacaaaaaaaaagattacgtacagtaacatccagaaa 8889
Query: 267 atcagcccttgaattaagaaaaacgtcaatcctactactcatatgagtatactatccttt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8888 atcagcccttgaattaagaaaaacgtcaatcctactactcatatgagtatactatccttt 8829
Query: 327 tttagcgtgttatgcaactgactccatacctatgtatttccccgttattgtcacgtgact 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8828 tttagcgtgttatgcaactgactccatacctatgtatttccccgttattgtcacgtgact 8769
Query: 387 ctgtttaattcgaaaatttttctggctcgatacctctcaacatgaaaattgactttcgca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8768 ctgtttaattcgaaaatttttctggctcgatacctctcaacatgaaaattgactttcgca 8709
Query: 447 ggaagcttgaatattttatcatttttgatgttcgaatatacatgctatatgaataatgat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8708 ggaagcttgaatattttatcatttttgatgttcgaatatacatgctatatgaataatgat 8649
Query: 507 taaatgagaaagtatatgtacgaagttcttaaaacttggtgtttttagttattgattttg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8648 taaatgagaaagtatatgtacgaagttcttaaaacttggtgtttttagttattgattttg 8589
Query: 567 cataataagaatcctttcttctcttcaatccacttgnttttattttcttttggattatac 626
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 8588 cataataagaatcctttcttctcttcaatccacttgtttttattttcttttgtattatac 8529
Query: 627 ttttcctcttttctctttcgtatatacac-gtatatgattcgaagtc-actaccgatcat 684
||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct: 8528 ttttcctcttttctctttcgtatatacacggtatatgattcgaagtcaactacggatcat 8469
Query: 685 tag-agcat-acgagaacgatgtctactccatctgaagcagtgccaaaatcccgtggtaa 742
||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 8468 tagaagcataacgagaacgatgtctactccatctgaagcagtgccaaaatccggtggt-a 8410
Query: 743 aattgcattttaccttgaagaccccttaagggtaccaaggactgggctgaaaaggatatg 802
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 8409 aattgcagtttaccttgaagacccc-taagggtaccaaggactgggctgaaaaggatatg 8351
Query: 803 g 803
|
Sbjct: 8350 g 8350
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7903
Number of Sequences: 1807
Number of extensions: 7903
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)