BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZH09FM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1655 446 e-125
>3x_Contig1655
Length = 16228
Score = 446 bits (225), Expect = e-125
Identities = 420/485 (86%)
Strand = Plus / Plus
Query: 87 cgaggatacttccacctaaccacccttggtactgtctttccctcagatgtccggaggata 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15734 cgaggatacttccacctaaccacccttggtactgtctttccctcagatgtccggaggata 15793
Query: 147 gcatccggaatttcaatgcaggtaatgatttatttaattcgtgcatgattctatctgaaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15794 gcatccggaatttcaatgcaggtaatgatttatttaattcgtgcatgattctatctgaaa 15853
Query: 207 gaccaggaatctttgaggtaccaccagtaagtacaacattatgtgctaaagtagctctta 266
||||||||||||||||||||||||||||||||| || ||||||||||||||||| | |||
Sbjct: 15854 gaccaggaatctttgaggtaccaccagtaagtaaaaaattatgtgctaaagtagatatta 15913
Query: 267 gatcaacatcagcttccatcattgatttattgatcaaatctacaattccggctacttcat 326
||| || || || || || |||||||||||||| |||| || |||| || || || ||
Sbjct: 15914 gataaaaataagattaaataattgatttattgataaaatataaaattaaggataattaat 15973
Query: 327 cttcgcccttggcttgaatcccattagaaggtactgtagcttttgcagatgattcattgg 386
|| | |||| |||||| ||||||||||| ||||| ||||| |||||||| |||||
Sbjct: 15974 attagaaattggattgaataaaattagaaggtaatgtagattttgaagatgattaattgg 16033
Query: 387 aattcgcatcttcatttttaatttcgttactattttgttcgttgttggaggaatcctctt 446
|||| | || || ||||||||||| |||| ||||||||| ||||||||||||||| | ||
Sbjct: 16034 aattagaatattaatttttaatttagttaatattttgttagttgttggaggaatcatatt 16093
Query: 447 tattttccactggtcttttaccattttcattaggttcctgtgaaggcgagtccaccgctt 506
||||||| | |||| ||||| ||||| |||||||| |||||||| |||| | | ||
Sbjct: 16094 tattttcaaatggtattttaaaattttaattaggttaatgtgaaggagagtaaaaagatt 16153
Query: 507 cttgttccgtagatgctggtacaggggtggattcggcagtattttccttttctttagtat 566
||||| ||||||| ||||| ||||||||||| || |||||||| |||| ||||||||
Sbjct: 16154 attgttaagtagatgatggtaaaggggtggattaggaagtattttaattttatttagtat 16213
Query: 567 ttgta 571
|||||
Sbjct: 16214 ttgta 16218
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7707
Number of Sequences: 1807
Number of extensions: 7707
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)