BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZH09RM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1485 1477 0.0
>3x_Contig1485
Length = 9830
Score = 1477 bits (745), Expect = 0.0
Identities = 891/926 (96%), Gaps = 11/926 (1%)
Strand = Plus / Minus
Query: 45 cttgttatgtacgtgaaatacggtttcagcaattagatcgtagttgatttggccagaggt 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9525 cttgttatgtacgtgaaatacggtttcagcaattagatcgtagttgatttggccagaggt 9466
Query: 105 gaaaaacttcgaatttgcagtaggtgttaaatacatgtcctcttcgttagtctctgcact 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9465 gaaaaacttcgaatttgcagtaggtgttaaatacatgtcctcttcgttagtctctgcact 9406
Query: 165 atagttcatttgctctctgcgaatcttgaagtttgtctcttttagtacatcatctaagaa 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9405 atagttcatttgctctctgcgaatcttgaagtttgtctcttttagtacatcatctaagaa 9346
Query: 225 ataatcttgaatcgggaaagtacgtccttcaatgtgaattgattttaaatttttgaagaa 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9345 ataatcttgaatcgggaaagtacgtccttcaatgtgaattgattttaaatttttgaagaa 9286
Query: 285 cgccttgaaaacatcaacatttacagtggcactcataagaattaatttcattcctttgac 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9285 cgccttgaaaacatcaacatttacagtggcactcataagaattaatttcattcctttgac 9226
Query: 345 tttcttcaataaattcttcaataggataattattaaatctgtatctatggacctttcgtg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9225 tttcttcaataaattcttcaataggataattattaaatctgtatctatggacctttcgtg 9166
Query: 405 aacttcatcgataacaaccacgcagtcattcaagaaagtgacatctccttgtagaatacg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9165 aacttcatcgataacaaccacgcagtcattcaagaaagtgacatctccttgtagaatacg 9106
Query: 465 aacaagaacaccagttgtcatgaatttaattctggtagcactttttgtcagattaacacc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9105 aacaagaacaccagttgtcatgaatttaattctggtagcactttttgtcagattaacacc 9046
Query: 525 tctaataatataccctacttcatcaccacatttgacacaccgttcctgtgatacacgctc 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9045 tctaataatataccctacttcatcaccacatttgacacaccgttcctgtgatacacgctc 8986
Query: 585 cgctagaccaattgcagatatccttcttggctgtgtgcagattatggacgtcttgttcaa 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8985 cgctagaccaattgcagatatccttcttggctgtgtgcagattatggacgtcttgttcaa 8926
Query: 645 atcgccatgttgcatt-aattatcaaggaccaattg-acgacctgtgttgatttacccga 702
|||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 8925 atcgccatgttgcattaaattatcaaggacaaattgaacgacctgtgttgatttacccga 8866
Query: 703 a-cagtttcacctgtaat-agaaccacatcattagaatttattagctctacgatagaatt 760
| |||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 8865 accagtttcacctgtaataagaacaacatcattagaatttataagctctacgatagaatt 8806
Query: 761 ctgtattttccaagccggtagctttgagcgctngtccctcatagtatgggattcattacc 820
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 8805 ctgtattttccaagccggtagctttgagcgctgttccctcatagtatggaattcattact 8746
Query: 821 tttctgcctcctttctat-ttcattcttcaactctg-naacctcttgattcgacatttta 878
||||||||| |||||||| ||||| | |||||||| ||||||||||||||||| ||||
Sbjct: 8745 tttctgcct-ctttctatattcatcttccaactctgaaaacctcttgattcgacaattta 8687
Query: 879 naagtttctggcattgaattctcctttttttattaagcctttggatcaaattttttaaat 938
|| |||||||||||| ||| |||||||||||| |||| ||||||||| || ||
Sbjct: 8686 g-aggctctggcattgaa-tcttctttttttattagtgcttttgatcaaattattagaag 8629
Query: 939 tgattttcaatgcgttccttttgtta 964
||| |||||||||||| |||||||||
Sbjct: 8628 tga-tttcaatgcgtt-cttttgtta 8605
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8025
Number of Sequences: 1807
Number of extensions: 8025
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)