BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZH10FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig833 1142 0.0
>3x_Contig833
Length = 3148
Score = 1142 bits (576), Expect = 0.0
Identities = 713/747 (95%), Gaps = 9/747 (1%)
Strand = Plus / Plus
Query: 86 tggaattctgaaccgattaactgaggattgaataaaatctctggcgctctgaatttctca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 tggaattctgaaccgattaactgaggattgaataaaatctctggcgctctgaatttctca 956
Query: 146 ttatcaagttcaatctgtttcccatctggcagtctgaacattgtttgttttccgtgcatt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 ttatcaagttcaatctgtttcccatctggcagtctgaacattgtttgttttccgtgcatt 1016
Query: 206 gtgtagtttttctcttcttctttcggatccaatgctatatagcacgctttctctttgatg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 gtgtagtttttctcttcttctttcggatccaatgctatatagcacgctttctctttgatg 1076
Query: 266 attcgaacgatctctctttcgctactcgaaagcaaggaaaccccagtggactttcgtata 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1077 attcgaacgatctctctttcgctactcgaaagcaaggaaaccccagtggactttcgtata 1136
Query: 326 ag-aacttgcaaaag-ttctgatatatcacgaccagctatatcaatccttcgtatagctg 383
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1137 agcaacttgcaaaagcttctgatatatcacgaccagctatatcaatccttcgtatagctg 1196
Query: 384 atggtaatgtgtaaccatcgtaaactggaactgcgtgtgaacaaccatcaccggaatcca 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1197 atggtaatgtgtaaccatcgtaaactggaactgcgtgtgaacaaccatcaccggaatcca 1256
Query: 444 atacgcatcctgttgttcgcccactggcgtatagcgaaagcactgcctgaatcgatacat 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1257 atacgcatcctgttgttcgcccactggcgtatagcgaaagcactgcctgaatcgatacat 1316
Query: 504 ataccgcaggtacactaaaagtttcgaataataactcgcacatctgttctctattctttt 563
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1317 ataccgcagaacaattaaaagtttcgaataataactcgcacatctgttctctattctttt 1376
Query: 564 tgggattcaatggtgcctcagtgaccaacaccgnatgatcttgcaaactgctcagctggt 623
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1377 tgggattcaatggtgcctcagtgaccaacaccggatgatcttgcaaactgctcagctgta 1436
Query: 624 attctttttcgaaaacatgcccccatagctgctccaatgcatttcattctgtcacaacgc 683
|| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 1437 atcctttttcgaaaacatgcccccatagctgctccaatgcattccaatctgtcacaacgc 1496
Query: 684 catgttctaaa-gatggcgtatccttaaaagaccccgtattt-ctgtgctt-gttttcaa 740
||||||||||| ||||||||| | | |||||||||||||||| |||||||| |||| |||
Sbjct: 1497 catgttctaaaggatggcgta-cttcaaaagaccccgtatttcctgtgcttggtttccaa 1555
Query: 741 c-aaagtatt-ccattgaattttccagccctacctttactatatttaggattccccccca 798
| |||||||| |||| |||| |||||||| || |||||||||||||||| ||||| |||
Sbjct: 1556 cgaaagtattcccatcgaatcttccagccataactttactatatttaggtatccccacca 1615
Query: 799 aa-aaagttcttaacctttaagtttat 824
|| || |||| |||| |||| ||||||
Sbjct: 1616 aagaatgttcataacatttaggtttat 1642
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6712
Number of Sequences: 1807
Number of extensions: 6712
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)