BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZH10RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig456 791 0.0
3x_Contig1036 426 e-119
>3x_Contig456
Length = 1253
Score = 791 bits (399), Expect = 0.0
Identities = 501/522 (95%), Gaps = 10/522 (1%)
Strand = Plus / Minus
Query: 325 agtcatattttttgagaaagtccacgtcatttctagcaacatcatatgaagtaacaacga 384
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1253 agtcattttttttgagaaagtccacgtcatttctagcaacatcatatgaagtaacaacga 1194
Query: 385 tatcagctgttggaacttgtccctgtaaaggatatcttaccgaaggtccacctgcataaa 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1193 tatcagctgttggaacttgtccctgtaaaggatatcttaccgaaggtccacctgcataaa 1134
Query: 445 cgagaacatttagtgtaggtgagtactgttgaaattcttgttcccaatgtcctgtcaaag 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1133 cgagaacatttagtgtaggtgagtactgttgaaattcttgttcccaatgtcctgtcaaag 1074
Query: 505 aaggagggcaaatgattaaggatggaaggggacgtgttttttccgactgtgtctttttgt 564
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1073 aaggagggcaaatgaataaggatggaaggggacgtgttttttccgactgtgtctttttgt 1014
Query: 565 agtcttctgatctc-aatattggtcactagcattgatgcaaattgtttgtaaagtcttac 623
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1013 agtcttctgatctcaaatattggtcactagcaatgatgcaaattgtttgtaaagtcttac 954
Query: 624 ctaaacccatgtcatcacataaaataccatgcaaatgatacttgttttagaatgctaacc 683
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 953 ctaaacccatgtcatcacataaaataccatgcaaatgatacttgtttaagaatgctaacc 894
Query: 684 aattgacaccatcttgttgatattttcctc-aagttgcctttgatcggcactgggagttt 742
|||||||||||||||||||||| ||||||| |||||||| ||||||| |||||| |||||
Sbjct: 893 aattgacaccatcttgttgata-tttcctcaaagttgcc-ttgatcgccactggaagttt 836
Query: 743 aaattggtttggctttgggatggatccatcatttgctgtaagaaatcnc-ttctttttct 801
||| |||||||||||| ||||||||||||||||||||| | |||||| | ||||||||||
Sbjct: 835 aaa-tggtttggcttt-ggatggatccatcatttgctgaatgaaatctctttctttttct 778
Query: 802 ctacc-cctaaaagctcctc-gataaacc-acaggggctgca 840
||||| | ||| |||||||| |||||||| ||||||||||||
Sbjct: 777 ctacctcttaatagctcctcggataaaccaacaggggctgca 736
>3x_Contig1036
Length = 2982
Score = 426 bits (215), Expect = e-119
Identities = 218/219 (99%)
Strand = Plus / Minus
Query: 45 gcttctaatgccaaagcaccagctttctgttcctttgacgatgttttactatttctcgaa 104
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 229 gcttctaatgccaaagcaccagcttcctgttcctttgacgatgttttactatttctcgaa 170
Query: 105 ctggcaattggttttgcaaatctttcttggaacatcttttctgtacctaagaagccaggc 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 ctggcaattggttttgcaaatctttcttggaacatcttttctgtacctaagaagccaggc 110
Query: 165 atcaaaaagtcaaataatgaccataattcaactacattattctggataggagtacccgtc 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 atcaaaaagtcaaataatgaccataattcaactacattattctggataggagtacccgtc 50
Query: 225 aaaactaatctatgattggaattgattagcttcactgcc 263
|||||||||||||||||||||||||||||||||||||||
Sbjct: 49 aaaactaatctatgattggaattgattagcttcactgcc 11
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7109
Number of Sequences: 1807
Number of extensions: 7109
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 2
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)