BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZH11RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1468 1439 0.0
>3x_Contig1468
Length = 9852
Score = 1439 bits (726), Expect = 0.0
Identities = 844/868 (97%), Gaps = 14/868 (1%)
Strand = Plus / Minus
Query: 49 atgttgaagttgtattggcaccaaatattggtttagaggcattgacactcggagttgtag 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1610 atgttgaagttgtattggcaccaaatattggtttagaggcattgacactcggagttgtag 1551
Query: 109 tcattgcattatttccagatagtccgaaattaaaagcgggctttgcatcggtcttttgtt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1550 tcattgcattatttccagatagtccgaaattaaaagcgggctttgcatcggtcttttgtt 1491
Query: 169 caggttgtgtaccaaatgagaatccactcttgggttgagtgtctttagcctgttgcgacc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1490 caggttgtgtaccaaatgagaatccactcttgggttgagtgtctttagcctgttgcgacc 1431
Query: 229 cgccaaatagcgaagagctacttcctgctgctcctacggagccaaagccaccaaatgttg 288
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 1430 cgccaaatagcgaagagctacttcctgc--cttctacggagccaaagccaccaaatgttg 1373
Query: 289 gttttgctgcgcttgtattcgtggtgttgctgttgttattgttcgcattgctggcagcat 348
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1372 gttttg--gcgcttgtattcgtggtgttgctgttgttattgttcgcattgctggcagcat 1315
Query: 349 cgtttgcgttaaaacctccaaaagcaggttttggtgcatcgcctgtaccagcagttgtat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1314 cgtttgcgttaaaacctccaaaagcaggttttggtgcatcgcctgtaccagcagttgtat 1255
Query: 409 tagaggcaccaaacgaaaatggcgaagctgctggcttgactgcattagcgccctgttgtg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1254 tagaggcaccaaacgaaaatggcgaagctgctggcttgactgcattagcgccctgttgtg 1195
Query: 469 tattcataccaaagcctccgaatgcaggttttgtttgtccattgtcattggtagtggtcg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1194 tattcataccaaagcctccgaatgcaggttttgtttgtccattgtcattggtagtggtcg 1135
Query: 529 ctccaaacgctgaaaatgcatttccctgctgcgtattagagctaccagcagctgaaccga 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1134 ctccaaacgctgaaaatgcatttccctgctgcgtattagagctaccagcagctgaaccga 1075
Query: 589 aacttgcaaaagcattgccactggtctggcctccagtattgccaaagagagaggaagcac 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1074 aacttgcaaaagcattgccactggtctggcctccagtattgccaaagagagaggaagcac 1015
Query: 649 ctgtgctggtactggtgtttcctgtggtagatacattttgtcctgatccagtaccggcaa 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1014 ctgtgctggtactggtgtttcctgtggtagatacattttgtcctgatccagtaccggcaa 955
Query: 709 acaaattggaattgctgttcccaccgg-agcatttcc-cgctgtagaaaagttgaaagtg 766
||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 954 acaaattggaattgctgttcccaccggaagcatttccgcgctgtagaaaagttgaaagt- 896
Query: 767 ggggtttgaatttgaaactcattttgtttgattaacgaacccttgtaattgttccacttc 826
|||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 895 ggggtttgaa-ttgaaactcattttg-ttgattaacgaacccttgtaattg-tccacttc 839
Query: 827 ataaactagctttgcctatttcaaacccattccgttgcccattatttttacaaattttca 886
||| ||||||| |||||| |||||||| ||| |||| ||||||| | ||| ||||||||
Sbjct: 838 atagactagctatgccta-ttcaaaccaatt-cgtttgccattatgtatac-aattttca 782
Query: 887 gttttttggtttaatcatttcgagtttt 914
|||| || |||||||||| |||||||||
Sbjct: 781 gtttatt-gtttaatcatatcgagtttt 755
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6356
Number of Sequences: 1807
Number of extensions: 6356
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)