BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZH12FM1.SCF screened BAC_end
(979 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1022 1336 0.0
>3x_Contig1022
Length = 4856
Score = 1336 bits (674), Expect = 0.0
Identities = 742/758 (97%), Gaps = 5/758 (0%)
Strand = Plus / Plus
Query: 85 ctatttgaaaggttctttcatcaagtatgttaatttgcaagatgatatcatagacaaggt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1224 ctatttgaaaggttctttcatcaagtatgttaatttgcaagatgatatcatagacaaggt 1283
Query: 145 aaaacaacaatggggtcaaaacagaggcggtaaagacgatagaagaagaaataacaacta 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1284 aaaacaacaatggggtcaaaacagaggcggtaaagacgatagaagaagaaataacaacta 1343
Query: 205 caataataacaataattattatcagaatagggatggtaacagaagaggtggtagaagaaa 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1344 caataataacaataattattatcagaatagggatggtaacagaagaggtggtagaagaaa 1403
Query: 265 ctatcaaaactcatgtaacagaagggattacaacaacaacaataataataataataataa 324
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1404 ctatcaaaactcaggtaacagaagggattacaacaacaacaataataataataataataa 1463
Query: 325 taataacaatactcacagccataacaatgcaggatctcgtcgttataatattcaaaatag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1464 taataacaatactcacagccataacaatgcaggatctcgtcgttataatattcaaaatag 1523
Query: 385 atcacaatacgatgcatcatccaatccacagctttcgtattcgcaggcgtcaaacaatag 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1524 atcacaatacgatgcatcatccaatccacagctttcgtattcgcaggcgtcaaacaatag 1583
Query: 445 taatcaaactccacaattttgatttaacctcttttctcagcatttaattcttaagtattt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1584 taatcaaactccacaattttgatttaacctcttttctcagcatttaattcttaagtattt 1643
Query: 505 gtgtgtctacatggttacatattcaatcacttttattgcggttaaagagactattttgtt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1644 gtgtgtctacatggttacatattcaatcacttttattgcggttaaagagactattttgtt 1703
Query: 565 ggcttggacggtcaaaagtctataaaaacatctgtttcgattgcattcgatgcgatatcc 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1704 ggcttggacggtcaaaagtctataaaaacatctgtttcgattgcattcgatgcgatatcc 1763
Query: 625 taaacctttttctcgttactcctttcacacttttgagatttaaaactgaatttgggttat 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1764 taaacctttttctcgttactcctttcacacttttgagatttaaaactgaatttgggttat 1823
Query: 685 gaaattaaaagaactacctattaattatgattcagagttagtgaaccttaa-ttcaaagc 743
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1824 gaaattaaaagaactacctattaattatgattcagagttagtgaaccttaagttcaaagc 1883
Query: 744 agtttatcagtgcgtttatttattaagagtatgtgagccatggttaccgtgggaaaagaa 803
||| ||||||||| ||||| ||||||||||||||||| ||||| |||||| ||||||||
Sbjct: 1884 agtatatcagtgc-tttatatattaagagtatgtgag-catgggtaccgt-ggaaaagat 1940
Query: 804 caaaggctgggaatttttaaattacctctttacaaaaa 841
|||| | || | ||||||||||| |||| ||||||||
Sbjct: 1941 caaatgttgttattttttaaatta-ctctatacaaaaa 1977
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,799
Number of Sequences: 1807
Number of extensions: 15799
Number of successful extensions: 605
Number of sequences better than 1.0e-20: 1
length of query: 979
length of database: 10,358,551
effective HSP length: 16
effective length of query: 963
effective length of database: 10,329,639
effective search space: 9947442357
effective search space used: 9947442357
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)