BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC34ZH12RM1.SCF screened BAC_end
         (974 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1683                                                        1461   0.0  

>3x_Contig1683 
          Length = 16378

 Score = 1461 bits (737), Expect = 0.0
 Identities = 821/842 (97%), Gaps = 6/842 (0%)
 Strand = Plus / Plus

                                                                        
Query: 48   tattggtcaattggcatcctgggtcggagcaatgtcctatttctgtgccagaattccaca 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5689 tattggtcaattggcatcctgggtcggagcaatgtcctatttctgtgccagaattccaca 5748

                                                                        
Query: 108  attgatcaagaattacaaaaggaagagtactgatgggctttcacccctcctctttataag 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5749 attgatcaagaattacaaaaggaagagtactgatgggctttcacccctcctctttataag 5808

                                                                        
Query: 168  tacgttaattgcaaatgtcacatacacactatccattttcaccagttgctcttatctcac 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5809 tacgttaattgcaaatgtcacatacacactatccattttcaccagttgctcttatctcac 5868

                                                                        
Query: 228  agatgaggacaagctaggtttcgtactcaatgcattaccatttatcgtggggagcgcagg 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5869 agatgaggacaagctaggtttcgtactcaatgcattaccatttatcgtggggagcgcagg 5928

                                                                        
Query: 288  cactgtagtgttcgatttgatctacttctaccaacactacgttttgtacgcggaagacta 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5929 cactgtagtgttcgatttgatctacttctaccaacactacgttttgtacgcggaagacta 5988

                                                                        
Query: 348  caacattagaagacttgaatctgacgagttcactccattgatgaatgacggaacggtttc 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5989 caacattagaagacttgaatctgacgagttcactccattgatgaatgacggaacggtttc 6048

                                                                        
Query: 408  ccccctatcaaccaattcctattaacaatttctgtgttcttccccacaccaatgtgcaca 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6049 ccccctatcaaccaattcctattaacaatttctgtgttcttccccacaccaatgtgcaca 6108

                                                                        
Query: 468  tatacgtatatattcacagaataattatatgtaatcatttctcgagcttgaaacttcgaa 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6109 tatacgtatatattcacagaataattatatgtaatcatttctcgagcttgaaacttcgaa 6168

                                                                        
Query: 528  aacaccggcactactgaccggtttctcaatgccctgctttgaatatgggaccgatcatgt 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6169 aacaccggcactactgaccggtttctcaatgccctgctttgaatatgggaccgatcatgt 6228

                                                                        
Query: 588  catttgtcatggagcacaccagtccgtggcacatcgtgactactccatgcccctggactg 647
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 6229 catttgtcatggagcacaccagtccgtggcacagcgtgactactccatgcccctggactg 6288

                                                                        
Query: 648  aaccactagccttttcaacaacggaataacaccgtgttataagatggcgaaaagtatcgt 707
            ||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 6289 aaccact-gccttttcaacaacggaataacaccgtgtaataagagggcgaaaagtatcgt 6347

                                                                        
Query: 708  -aaatatcgacaccgggacttacgttcaagagcatcngattaatgaaggaacaaccgtta 766
             ||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||
Sbjct: 6348 aaaatatcgacaccgggacttacgttcaagagcatcggataaatgagggaacaaccgtta 6407

                                                                        
Query: 767  ctcacataacaattatttgttgctactggtgtctccttctgagttggccttttttttctt 826
            ||||||||||||||| ||||||||||| |||||| |||||| ||| ||||||||||||||
Sbjct: 6408 ctcacataacaatta-ttgttgctact-gtgtcttcttctgtgtt-gccttttttttctt 6464

                                                                        
Query: 827  ttactcgnnttctagcaaatcgtagctcgcaacatatc-attttagcactagcatccgga 885
            |||||||  |  |||||||||||||||||||||||| | || | ||||||||||||||||
Sbjct: 6465 ttactcgtttcttagcaaatcgtagctcgcaacatagcaatatcagcactagcatccgga 6524

              
Query: 886  at 887
            ||
Sbjct: 6525 at 6526


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6272
Number of Sequences: 1807
Number of extensions: 6272
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)