BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZA01FM1.SCF screened BAC_end
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1358 1231 0.0
>3x_Contig1358
Length = 7912
Score = 1231 bits (621), Expect = 0.0
Identities = 673/685 (98%), Gaps = 4/685 (0%)
Strand = Plus / Plus
Query: 87 tggcaacaacttcagttttatttggatccatgatcttgttcgacttacttagaggatttg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 tggcaacaacttcagttttatttggatccatgatcttgttcgacttacttagaggatttg 981
Query: 147 ttctggatgtggctttccaaatcatctacacttttgctagtgaaagccctgattccaaaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 ttctggatgtggctttccaaatcatctacacttttgctagtgaaagccctgattccaaaa 1041
Query: 207 tgttcaagtttgctgtgcatgcattgtatgcattcagaatgcgccttaacgagtactctc 266
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1042 tgttcaagtttgctgtgcaggcattgtatgcattcagaatgcgccttaacgagtactctc 1101
Query: 267 cattctgtaagcgtttgctagacgagattccaggtttgcagactcaaccacaaattcaac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1102 cattctgtaagcgtttgctagacgagattccaggtttgcagactcaaccacaaattcaac 1161
Query: 327 agattttgacagaatcagctgcaaatccaaacgtttcgattccagagcaaaaggctccag 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1162 agattttgacagaatcagctgcaaatccaaacgtttcgattccagagcaaaaggctccag 1221
Query: 387 ccttagtagagttgaattactttaacatcaatgaggtcatcagtccagtaacacaagagg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1222 ccttagtagagttgaattactttaacatcaatgaggtcatcagtccagtaacacaagagg 1281
Query: 447 ttccgcctagagaagttactgaggcaatcttattcaacgtaaacaacataacaatgagta 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1282 ttccgcctagagaagttactgaggcaatcttattcaacgtaaacaacataacaatgagta 1341
Query: 507 attttgacacgaagatcgtcgaattaaaagctcttttggaagaaaaatactaccaatggt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1342 attttgacacgaagatcgtcgaattaaaagctcttttggaagaaaaatactaccaatggt 1401
Query: 567 tctcgaattatttggtaaatcagagatccaaaactgaaccaaattattatcccttatatg 626
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1402 tctcgaattatttggtaaatcagagatccaaaactgaaccaaattatcatcccttatatg 1461
Query: 627 ctaaaatgttaaaaataatcgattcaaagactttacatgcatatatgttgaacttcacct 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1462 ctaaaatgttaaaaataatcgattcaaagactttacatgcatatatgttgaacttcacct 1521
Query: 687 atatacaattgtttattattgttgccacctaaagtatttggcacaatactgaaaagactc 746
||| |||||||||||||| ||||| || |||||| | |||| |||| |||||||||||||
Sbjct: 1522 ataaacaattgtttatta-tgttgtcaactaaag-aattgggacaa-actgaaaagactc 1578
Query: 747 acatggaaaaatttattctcatggt 771
|||| ||||||||||| ||||||||
Sbjct: 1579 acat-gaaaaatttatcctcatggt 1602
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7969
Number of Sequences: 1807
Number of extensions: 7969
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)