BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZA01RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1807 1118 0.0
>3x_Contig1807
Length = 66587
Score = 1118 bits (564), Expect = 0.0
Identities = 668/695 (96%), Gaps = 7/695 (1%)
Strand = Plus / Plus
Query: 52 atggttcttgaatatacgaaaatacatcttggatcatttgagctcttaaatgacaaccac 111
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44132 atggttcttgaa-atacgaaaatacatcttggatcatttgagctcttaaatgacaaccac 44190
Query: 112 aatcggtaacatgagcatcgaagaccaaataaccgcgatcagaggatgaaatggctattc 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44191 aatcggtaacatgagcatcgaagaccaaataaccgcgatcagaggatgaaatggctattc 44250
Query: 172 cgttttgaagaagtgcttgaaagtctgcgaatgcttcattcaaatcatcgcacaaaagaa 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44251 cgttttgaagaagtgcttgaaagtctgcgaatgcttcattcaaatcatcgcacaaaagaa 44310
Query: 232 tcaaacctatcagatgacctaccaattggttagatggaatcgatgttttcttgtcgtttc 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44311 tcaaacctatcagatgacctaccaattggttagatggaatcgatgttttcttgtcgtttc 44370
Query: 292 ccgctgtcaaagtaacacctaagcgttggaaaagcagttggtacatttttaattttcttg 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44371 ccgctgtcaaagtaacacctaagcgttggaaaagcagttggtacatttttaattttcttg 44430
Query: 352 gtgcatgccatcgttgtgatgatatacaagacaacagaatttggtaataagaggagcctc 411
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 44431 gtgcatgccatcgttctgatgatatacaagacaacagaatttgttaataagaggagcctc 44490
Query: 412 tctaaattgttttcattcaatattcacttgctttatgtattctcgccaatgattatagtg 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44491 tctaaattgttttcattcaatattcacttgctttatgtattctcgccaatgattatagtg 44550
Query: 472 tctgaggactgatcacttcatcaaataaaaaagaaattgatattaaaattgtgctgccca 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44551 tctgaggactgatcacttcatcaaataaaaaagaaattgatattaaaattgtgctgccca 44610
Query: 532 aaactctcaacatgttcttgcaatctttgttgtcaaattgatgcatagcgtgttcaac-a 590
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 44611 aaactctcaacatgttcttgcaatctttgttgtcaaattgatgcatagcgtgttcaacaa 44670
Query: 591 caaccctttttcacagcacatggcattttccaccggttaatcatgaagcaaagttgtatt 650
|||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||
Sbjct: 44671 caaccctttttcacagtacatggcattttccaccgttgtatcatgaagcaaagttgtatt 44730
Query: 651 aaactcttttctttttggcaccttttactgtcattgccaactttataattctaaattgta 710
| ||| | ||| |||| || | |||||||||||||||| | |||| | ||||||||||
Sbjct: 44731 tagctc-tctctctttgtcaacatttactgtcattgccagc-ttatcagtctaaattgtc 44788
Query: 711 cgaaaggtttattttccttaaaaggaaattgggac 745
| |||||| |||||| |||||||||||| ||||
Sbjct: 44789 gg--aggttt-ttttccataaaaggaaattcggac 44820
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8207
Number of Sequences: 1807
Number of extensions: 8207
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)