BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZA02FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1725 894 0.0
3x_Contig1560 454 e-127
>3x_Contig1725
Length = 17473
Score = 894 bits (451), Expect = 0.0
Identities = 500/511 (97%), Gaps = 4/511 (0%)
Strand = Plus / Plus
Query: 315 cgttgttgatatggttgctgtccctagtgaagtagcacaactggatattttttcaaactc 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18 cgttgttgatatggttgctgtccctagtgaagtagcacaactggatattttttcaaactc 77
Query: 375 cactggtgctcctacacgcaaagaggcgctcaatacgtctgttcccttcgtttcgacaca 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 cactggtgctcctacacgcaaagaggcgctcaatacgtctgttcccttcgtttcgacaca 137
Query: 435 tactatcggaattttgtcagctaaattataccgttgcaaacccaaaatcaacccgttata 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 tactatcggaattttgtcagctaaattataccgttgcaaacccaaaatcaacccgttata 197
Query: 495 tagacctccgcctccaaaactgcaaacaatacctttaattttggttataggtatttttga 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tagacctccgcctccaaaactgcaaacaatacctttaattttggttataggtatttttga 257
Query: 555 actagccaagacatccatgatttcatccaccataaaggaatggccttcccatattagcgg 614
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 258 actagccaagacatccatgatttcatccaccataaaggaatggccttcccaaattagcgg 317
Query: 615 attatcgaaaggatggctgtaaattggctcgtatttaaaggaatcaagttttcttataag 674
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 318 attatcgaaaggatggctgtaaattggctcgtatttaaaggaatcaagtttcttcataag 377
Query: 675 gtgctccttcatgaaagaatctgcctctgtccaatggttaccatgaacaacaacattttg 734
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||
Sbjct: 378 gtgctccttcatgaaagaatctgcctctttccaatggttaccatgaacaacaaca-tctg 436
Query: 735 cgccgtaggagcgaatcttttctataattcttggacgtgttgcattcgacacatct-ctg 793
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 437 cgccgtaggagcgaatcttttctataattcttggacgtgttgcattcgacacaactactg 496
Query: 794 tacagggtaacgttcaatttcgagggacgca 824
||||||| ||||||||| |||||||||||||
Sbjct: 497 tacaggg-aacgttcaa-ttcgagggacgca 525
>3x_Contig1560
Length = 9209
Score = 454 bits (229), Expect = e-127
Identities = 242/245 (98%), Gaps = 1/245 (0%)
Strand = Plus / Minus
Query: 89 tagatgacccaccacaaccgatcaagatgacataatcatcatctttaatgtctgaaccga 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tagatgacccaccacaaccgatcaagatgacataatcatcatctttaatgtctgaaccga 186
Query: 149 gaatattttgtagtttatcgatattatacccgaagtataacgttgccccacacccaggtt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gaatattttgtagtttatcgatattatacccgaagtataacgttgccccacacccaggtt 126
Query: 209 ccgcaactatgctggtttcgttagaaaattgaaggcaagttgaaatcacttcagtatcag 268
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ccgcaactatgttggtatcgttagaaaattgaaggcaagttgaaatcacttcagtatcag 66
Query: 269 agatgacagctgacttgcttccgtgacgtttcacatttt-ggtaagccgttgttgatatg 327
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 65 agatgacagctgacttgcttccgtgacgtttcacattttgggtaagccgttgttgatatg 6
Query: 328 gttgc 332
|||||
Sbjct: 5 gttgc 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7246
Number of Sequences: 1807
Number of extensions: 7246
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 2
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)