BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZA02RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1675 1334 0.0
>3x_Contig1675
Length = 13954
Score = 1334 bits (673), Expect = 0.0
Identities = 723/737 (98%), Gaps = 2/737 (0%)
Strand = Plus / Minus
Query: 42 gcttcgatgtcctcttgatcatttttatcactgtcacgttcattcaaagaagccatgtct 101
|||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 5789 gcttcgttgtcctcttgatcatcttcatcactgtcacgttcattcaaagaagccatgtct 5730
Query: 102 ccttcttcggctaattggtcaaatgccatcaatgcattgaccaactcctcgttagcatgg 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5729 ccttcttcggctaattggtcaaatgccatcaatgcattgaccaactcctcgttagcatgg 5670
Query: 162 agtaaagcacctaaaagttcaccaccggtaatcagttgcaaataacgtagaacctttctt 221
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5669 agtaaagcacctaaaagttcaccaccggtaatcagttgcaaataacgtagaaccttcctt 5610
Query: 222 ctcaatgctcttgcttgaacgaatttggccgtacacagctcactgtcggtggacttacta 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5609 ctcaatgctcttgcttgaacgaatttggccgtacacagctcactgtcggtggacttacta 5550
Query: 282 tgagctggaattgccaacaaagcattcgatagagacactgcggtttctaaggagtcgcta 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5549 tgagctggaattgccaacaaagcattcgatagagacactgcggtttctaaggagtcgcta 5490
Query: 342 atcaatagtttaatcttaggagcttccttctcaaggtcaattcttggaatcccataccgt 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5489 atcaatagtttaatcttaggagcttccttctcaaggtcaattcttggaatcccataccgt 5430
Query: 402 tcatcagcggtgacagctcttcgatcggcagtgtcacttaaaaattgaggtaatgctttc 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5429 tcatcagcggtgacagctcttcgatcggcagtgtcacttaaaaattgaggtaatgctttc 5370
Query: 462 tttttcttctgataagatttgttcatgaccttggtatgtcttttcttgtttttgtaagcc 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5369 tttttcttctgataagatttgttcatgaccttggtatgtcttttcttgtttttgtaagcc 5310
Query: 522 ttttcacaaacagtaaatagcatttcaaaaccttcaacctcctggtgacttgccaaatat 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5309 ttttcacaaacagtaaatagcatttcaaaaccttcaacctcctggtgacttgccaaatat 5250
Query: 582 tgataccaccctattagataacatgtacattttcttgaaatttgttttgggtatttgcct 641
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5249 tgataccaccctattagataacatgtacattttcttgaaatttgttttgggtatttccct 5190
Query: 642 gaattagaagacatatccagaagaacgttaatcaatcttgaatcgggatagaacaatggg 701
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 5189 gaattagaagacatatccagaagaacgttaatcaatctgaaatcggaatagaacaatggt 5130
Query: 702 taatggatgagctgggaaacaaataaagttaatagatccaaatgcccttgattgttggta 761
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 5129 aaatggatgagctgggaaacaaataagtttaatagatcc-aatgcccttgattgttggta 5071
Query: 762 caggttcaccatgcttt 778
|||| ||||||||||||
Sbjct: 5070 cagg-tcaccatgcttt 5055
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7283
Number of Sequences: 1807
Number of extensions: 7283
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)