BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZA03FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig734 759 0.0
3x_Contig106 309 5e-84
>3x_Contig734
Length = 1760
Score = 759 bits (383), Expect = 0.0
Identities = 386/387 (99%)
Strand = Plus / Minus
Query: 86 cacagtcccactgatagtctcgttcggtttccacactctgtgcacatcatcaagtacaat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cacagtcccactgatagtctcgttcggtttccacactctgtgcacatcatcaagtacaat 328
Query: 146 ttcaaactccaaaatgtacgatttcataccggagtgcttgaaaatggagctcttgccagc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttcaaactccaaaatgtacgatttcataccggagtgcttgaaaatggagctcttgccagc 268
Query: 206 attgctcactgattcgaagctactcaccacaaatgcactaggagaacctcgctcagctcg 265
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 attgctcactgaatcgaagctactcaccacaaatgcactaggagaacctcgctcagctcg 208
Query: 266 ttcgttcgaccgcagaagtttatcaaataatcccatggtctaattcgactttaagctctt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ttcgttcgaccgcagaagtttatcaaataatcccatggtctaattcgactttaagctctt 148
Query: 326 atatggaggccaaaaataaacgaaaggaacacgaaagaaaaatacaagccggcacacaac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 atatggaggccaaaaataaacgaaaggaacacgaaagaaaaatacaagccggcacacaac 88
Query: 386 ctaagcacaattatgtcttcaaaaatctaaagctctcccttatcttgtttcaccctttgg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 ctaagcacaattatgtcttcaaaaatctaaagctctcccttatcttgtttcaccctttgg 28
Query: 446 actctatgttcgtttggtttatatatc 472
|||||||||||||||||||||||||||
Sbjct: 27 actctatgttcgtttggtttatatatc 1
>3x_Contig106
Length = 1047
Score = 309 bits (156), Expect = 5e-84
Identities = 201/215 (93%), Gaps = 1/215 (0%)
Strand = Plus / Plus
Query: 704 atggcaatttaactgtagaatcaggtggattatactgtttgccaatatttatcattcagt 763
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 13 atggcaatttaactttagaatcaggtgg-ttatactgtttgccaatatttatcatgcagt 71
Query: 764 aaattattatcttngatttgatcaaagtcggaaataagtagtcattgggcatgtacatac 823
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 aaattattatcttgattttgatcaaagtcggaaataagtagtcattgggcatgtacatac 131
Query: 824 atatgttttattctcaagtacgggacaagaaaggctgccaagtacaggtttcggtttgag 883
||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 132 atatgttttatcttcaagtacgggacaggaaaggctgccaagtacgggtttcggtttgag 191
Query: 884 tacaaactgacattttgtaaaggatgtgaaatacg 918
||||||||||| ||||||| ||||||||| ||||
Sbjct: 192 aacaaactgacaatttgtaagggatgtgaagtacg 226
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8559
Number of Sequences: 1807
Number of extensions: 8559
Number of successful extensions: 73
Number of sequences better than 1.0e-20: 2
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)