BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZA03RM1.SCF screened BAC_end
(766 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig858 500 e-141
>3x_Contig858
Length = 3029
Score = 500 bits (252), Expect = e-141
Identities = 310/324 (95%), Gaps = 4/324 (1%)
Strand = Plus / Plus
Query: 43 gcttccatgtccttttctctaattctcctttgcatttcgctattttgttgctttctcttc 102
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1267 gcttccatgtccttttctctaaatctcctttgcatttcgctattttgttgctttctcttc 1326
Query: 103 ttggctagttgtttggaagctttgatgttgaatccatcacttaaaatagtttgtacttcc 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1327 ttggctagttgtttggaagctttgatgttgaatccatcacttaaaatagtttgtacttcc 1386
Query: 163 tccaattctagaccagatagttctggataacagagataacagaagacggtatattctgca 222
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 1387 tccaattctagaccagatagttctggataacagagataacagaagacggtagatactgca 1446
Query: 223 gctagtgcagcaaataatgaaaatgtaccagtcggtgttatgttttgtaacattgttagg 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1447 gctagtgcagcaaataatgaaaatgtaccagtcggtgttatgttttgtaacattgttagg 1506
Query: 283 aaggtangatgc-atatttagggacccag-ccagttagtagctgtacaataagaaagtcc 340
|||||| ||||| ||| ||||||| |||| ||||||||||||||||||||||| |||| |
Sbjct: 1507 aaggta-gatgcaataattagggaaccagcccagttagtagctgtacaataag-aagtac 1564
Query: 341 ctaccccttttacggatgtggcaa 364
|||| ||| | |||||||| ||||
Sbjct: 1565 ctacacctctaacggatgttgcaa 1588
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 32,672
Number of Sequences: 1807
Number of extensions: 32672
Number of successful extensions: 3279
Number of sequences better than 1.0e-20: 1
length of query: 766
length of database: 10,358,551
effective HSP length: 16
effective length of query: 750
effective length of database: 10,329,639
effective search space: 7747229250
effective search space used: 7747229250
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)