BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZA05FM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig657 559 e-159
3x_Contig846 515 e-146
>3x_Contig657
Length = 1917
Score = 559 bits (282), Expect = e-159
Identities = 326/338 (96%), Gaps = 2/338 (0%)
Strand = Plus / Minus
Query: 483 caggaaatattcattatacgtggacttatatacattgatataatccatctatatgatgag 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1917 caggaaatattcattatacgtggacttatatacattgatataatccatctatatgatgag 1858
Query: 543 ttaaggtaatctttccgccaaagtagccttaaaaaaaaagtaaaaggatcaagtcacacc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1857 ttaaggtaatctttccgccaaagtagccttaaaaaaaaagtaaaaggatcaagtcacacc 1798
Query: 603 agatcagaccaaattaattgattagtgtttttgatttgatagttccgattttataatatg 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1797 agatcagaccaaattaattgattagtgtttttgatttgatagttccgattttataatatg 1738
Query: 663 atgaagaaaaaaagtattgtacaagacaaaatattaatttctcagaattagttcatggac 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1737 atgaagaaaaaaagtattgtacaagacaaaatattaatttctcagaattagttcatggac 1678
Query: 723 ttgaccaatttgttgatgaatttttcacgggtaccgaaagtacccaccctgaatgaaatg 782
|||||||||||||||||||||| ||||||| ||||||||| | ||||| || ||||| ||
Sbjct: 1677 ttgaccaatttgttgatgaattcttcacggttaccgaaag-aaccaccttggatgaagtg 1619
Query: 783 cttggactttccttggaacccccctacccccggatggg 820
|||| ||||| |||||||| |||| ||| |||||||||
Sbjct: 1618 cttgaacttt-cttggaacaccccaaccaccggatggg 1582
>3x_Contig846
Length = 2695
Score = 515 bits (260), Expect = e-146
Identities = 289/299 (96%)
Strand = Plus / Plus
Query: 87 tttaatcgtacatagtgtaaagttggcattctgccgtgcagggaataagatgtaaatacc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2397 tttaatcgtacatagtgtaaagttggcattctgccgtgcagggaataagatgtaaatacc 2456
Query: 147 gatcgtgaaattaccaagaggcgtatttccaaagacggttgactaacaccccagactact 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2457 gatcgtgaaattaccaagaggcgtatttccaaagacggttgactaacaccccagactact 2516
Query: 207 tgctgagatcattttcttggtttagctattctgtgtctatggcgatttgaagagctagag 266
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2517 tgctgagatcagccacttggtttagctattctgtgtctatggcgatttgaagagctagag 2576
Query: 267 atgatcatggaagatccctgcggttgtaggtggaatcaaggtaattcgcccattcctttg 326
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2577 atgatcatggaagagtcctgcggttgtaggtggaatcaaggtaattcgcccattcctttg 2636
Query: 327 ttcataagctgtatcacgtgattaggttaattcgtttttagtttatttacttactgaga 385
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 2637 ttcataagctgtatcacgtgattaggttaatntcgttttagtttatttacttactgaga 2695
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7658
Number of Sequences: 1807
Number of extensions: 7658
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 2
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)