BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZA05RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1477 1405 0.0
>3x_Contig1477
Length = 9322
Score = 1405 bits (709), Expect = 0.0
Identities = 756/769 (98%), Gaps = 2/769 (0%)
Strand = Plus / Plus
Query: 45 gcttcataaaactaaccaacttattgaagattttggtaccattaggcaagaaaaagattg 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2055 gcttcataaaactaaccaacttattgaagattttggtaccattaggcaagaaaaagattg 2114
Query: 105 aaccaggtgatattggatctgttatgtataactcctgtttggtcgatacctcatgtgcag 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2115 aaccaggtgatattggatctgttatgtataactcctgtttggtcgatacctcatgtgcag 2174
Query: 165 tggtggctgcactatcgacagcttgtgggccctcattatgattggaacagagtcttttga 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2175 tggtggctgcactatcgacagcttgtgggccctcattatgattggaacagagtcttttga 2234
Query: 225 caaactgacaaggtacgcccgcatttcgtactggtaggtagtttattcgctttaataaca 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2235 caaactgacaaggtacgcccgcatttcgtactggtaggtagtttattcgctttaataaca 2294
Query: 285 tatttcagaacgagtctcttcaatgaatctgcccacagcgaactctcagctcgttgttgt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2295 tatttcagaacgagtctcttcaatgaatctgcccacagcgaactctcagctcgttgttgt 2354
Query: 345 aattacatttctaattcgatctttccagtgtaggtagtttccatgcatggttgtttagtt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2355 aattacatttctaattcgatctttccagtgtaggtagtttccatgcatggttgtttagtt 2414
Query: 405 tttttcactatttaactcagtagaaacttgaagttcccacttgcatgtgatgagacagaa 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2415 tttttcactatttaactcagtagaaacttgaagttcccacttgcatgtgatgagacagaa 2474
Query: 465 cgatgcaatgtagaacatggacctatctgcctacagtactacttgcttcaaagttagcta 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2475 cgatgcaatgtagaacatggacctatctgcctacagtactacttgcttcaaagttagcta 2534
Query: 525 gacgaatagagttacttacatttgatctcttttatatatatatgatattacgagagttgc 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2535 gacgaatagagttacttacatttgatctcttttatatatatatgatattacgagagttgc 2594
Query: 585 caatagataataaatacatcgttattgagtccaaataacgatttagaattcggagtcaag 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2595 caatagataataaatacatcgttattgagtccaaataacgatttagaattcggagtcaag 2654
Query: 645 ataatgctgtaagcccttcgactcagacgccttataaagggcaacttttccttgccattt 704
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2655 ataatgctgtaagccctcgaactcagacgccttataaagggcaacttttccttgccattt 2714
Query: 705 gccttcattttttacctccgccccctttcagctgagatacttctgatttcaacttggttg 764
|||| || |||||||||||||| |||||||||||||||||| |||||||||||||| ||
Sbjct: 2715 gcctcca-tttttacctccgccacctttcagctgagatactactgatttcaacttgtctg 2773
Query: 765 acacccttttggattctgttcctagaatcagaaacaatgattatagccc 813
||| ||| |||||||||||| |||||||||||||||||||| |||||||
Sbjct: 2774 aca-cctcttggattctgttactagaatcagaaacaatgatgatagccc 2821
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,074
Number of Sequences: 1807
Number of extensions: 15074
Number of successful extensions: 81
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)