BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZA06RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1404 1300 0.0
>3x_Contig1404
Length = 8096
Score = 1300 bits (656), Expect = 0.0
Identities = 791/823 (96%), Gaps = 10/823 (1%)
Strand = Plus / Minus
Query: 50 gcttgacattgatctggctatatc-actagggaaaagaacaaatattcggaagaagttct 108
|||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct: 5478 gcttgacattgatctggctagagcgactagggaaaagaacaaatattcggaagaagttct 5419
Query: 109 agtctgtaataaggatatttcaatactttccgaacaattggaatcaattcgactggaaaa 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5418 agtctgtaataaggatatttcaatactttccgaacaattggaatcaattcgactggaaaa 5359
Query: 169 ggaaagaattgaagaacaagtaatcgaaaacaatgaaagaaaagcagagttgatctctag 228
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5358 ggaaagaattgaagaacaagtaatcgaaaacaatgaaagaaaagcagagttgaactctag 5299
Query: 229 cgtggagaaattgaaacaagagcttctttctattgaaagagattccaatgagtttaaagc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5298 cgtggagaaattgaaacaagagcttctttctattgaaagagattccaatgagtttaaagc 5239
Query: 289 aaaagaattagagtactcagatagattagagaagttgcatgggctacaagagtatgttaa 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5238 aaaagaattagagtactcagatagattagagaagttgcatgggctacaagagtatgttaa 5179
Query: 349 aaaacagctgagaagttatgaaacctcactacaaagtcttaaaatcagagacgtttccaa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5178 aaaacagctgagaagttatgaaacctcactacaaagtcttaaaatcagagacgtttccaa 5119
Query: 409 acttttaagtcaattgaatgacggaataattgagtcatgcacagatgtaactgctaaggt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5118 acttttaagtcaattgaatgacggaataattgagtcatgcacagatgtaactgctaaggt 5059
Query: 469 aatgaatggtgacatagttcaaacgcagtctatcacagatgtcggaaataatgacgctat 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5058 aatgaatggtgacatagttcaaacgcagtctatcacagatgtcggaaataatgacgctat 4999
Query: 529 ggaagattctggtgaagctgcaacccacagcgggttaccaagtttgacggaaaccgagtt 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4998 ggaagattctggtgaagctgcaacccacagcgggttaccaagtttgacggaaaccgagtt 4939
Query: 589 ggaaaatctcgatttag-aactctagaac-tgaacttcatcatttac-agactacttggn 645
||||||||||||||||| ||||||||||| |||||||||||| |||| |||||||||||
Sbjct: 4938 ggaaaatctcgatttagaaactctagaacttgaacttcatcaattacaagactacttgg- 4880
Query: 646 attac-ttaacggagatatagaagtactagaggaattcgcacgcaggcttgcagaatacc 704
|| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 4879 ataactttaacggagatatagaagtactagaggaatacgcacgcaggcttgcagaatacc 4820
Query: 705 aacgtcgaaaactagacttaaatc-agccattgccaaaagggaagatgt-agaaataagt 762
|||||||||||||||||||||||| ||| |||||||||||||||| || ||||||||||
Sbjct: 4819 aacgtcgaaaactagacttaaatcaagcagttgccaaaagggaagaagtaagaaataagt 4760
Query: 763 gtggaagtttcaagaatganagactttgag-aatttttggaaggttttgggatcatattt 821
||| ||||||||||||||| |||| | ||| ||||| |||||||||| || ||||||| |
Sbjct: 4759 gtgaaagtttcaagaatgagagac-tagagaaatttatggaaggtttcggcatcatatct 4701
Query: 822 atgactcttaagggaatgtttcagatgattcccttggttggca 864
|||||||| |||| ||||| |||||||||| || ||| |||||
Sbjct: 4700 atgactctaaaggaaatgtatcagatgattaccatgggtggca 4658
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7374
Number of Sequences: 1807
Number of extensions: 7374
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)