BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZA07FM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1404 1172 0.0
>3x_Contig1404
Length = 8096
Score = 1172 bits (591), Expect = 0.0
Identities = 621/631 (98%)
Strand = Plus / Plus
Query: 87 cttacttctggtcttctcctttttctgcttttcatgtaaaatttcaatgtgttgttcaag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5481 cttacttctggtcttctcctttttctgcttttcatgtaaaatttcaatgtgttgttcaag 5540
Query: 147 tgaggcaacttttgcgatttgcatcttgagctcaattcctcctttctgcatgattctatc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5541 tgaggcaacttttgcgatttgcatcttgagctcaattcctcctttctgcatgattctatc 5600
Query: 207 cttgagatcatcaatcttatcttggctaaactttgaagcatcaattgtttgctgcaaatg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5601 cttgagatcatcaatcttatcttggctaaactttgaagcatcaattgtttgctgcaaatg 5660
Query: 267 ttgtctcaaaatatctagtttcttctcttcatccaacagtggctgttgattcttctcgtt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5661 ttgtctcaaaatatctagtttcttctcttcatccaacagtggctgttgattcttctcgtt 5720
Query: 327 catagaaagttccctagcaagctgtgatagtcgttggtgataggattccacctcagcgac 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5721 catagaaagttccctagcaagctgtgatagtcgttggtgataggattccacctcagcgac 5780
Query: 387 ccgagatcctttctcaagttgtattttggaaatctgaatatcaatctccggaagacgatc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5781 ccgagatcctttctcaagttgtattttggaaatctgaatatcaatctccggaagacgatc 5840
Query: 447 tgttaacttttgtaatgcagattccatctcatggaccatcgatagagctgacctataatt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5841 tgttaacttttgtaatgcagattccatctcatggaccatcgatagagctgacctataatt 5900
Query: 507 agtttctttggttgaaagttgtacttccattttctccacttcatcgcgagaatattgact 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5901 agtttctttggttgaaagttgtacttccattttctccacttcatcgcgagaatattgact 5960
Query: 567 tgccgtagtagcttttgatctcattaagccactttggggagaagaacccccttctgacat 626
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 5961 tgccgtagtagcttttgatctcattaagccactttggggagaagaaccccctcctgacat 6020
Query: 627 tgtaccggaaatatcgattaatttcccattcaacgtgaccactcttgaacttctttttcc 686
||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| ||
Sbjct: 6021 tgtaccggaaatatcgattaatttcccatccaacgtgaccactctgaaccttcttttccc 6080
Query: 687 ctaagctactccattagcttgctggaaatcc 717
|| ||||||| |||||||||||| ||||||
Sbjct: 6081 gtaggctactcgattagcttgctgtaaatcc 6111
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8125
Number of Sequences: 1807
Number of extensions: 8125
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)