BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZA08RM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1009 1098 0.0
>3x_Contig1009
Length = 4650
Score = 1098 bits (554), Expect = 0.0
Identities = 645/670 (96%), Gaps = 4/670 (0%)
Strand = Plus / Minus
Query: 49 tctcttgaatatcgtactgtgcatcatctcgtaataggtgtatatgtatatagtttgagt 108
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1600 tctcttgaatatcgtactggcaatcatctcgtaataggtgtatatgtatatagtttgagt 1541
Query: 109 tttatgtttgtgtttaacctcgtgacaatacacatacatatatttaaatcctaatataaa 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1540 tttatgtttgtgtttaacctcgtgacaatacacatacatatatttaaatcctaatataaa 1481
Query: 169 atatactctatcacaagaaccgaatcttcaactattcacatttcatacttcttatatata 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1480 atatactctatcacaagaaccgaatcttcaactattcacatttcatacttcttatatata 1421
Query: 229 aaactagaaccgaaaaccatcttagtgtaacgatactaacactctgtgtgcatattaatc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1420 aaactagaaccgaaaaccatcttagtgtaacgatactaacactctgtgtgcatattaatc 1361
Query: 289 tcgggctaaacgaagcataaaaaagtcaaaccaaaaacagttaaaatgctaaagataacg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1360 tcgggctaaacgaagcataaaaaagtcaaaccaaaaacagttaaaatgctaaagataacg 1301
Query: 349 aggtaactgtcagaaagtcagtctgagacagctgttctaacctgatttccagttttaagg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1300 aggtaactgtcagaaagtcagtctgagacagctgttctaacctgatttccagttttaagg 1241
Query: 409 tacattacagtacaatgcagatactcagctaggcgaattttttttattttgagaattttt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1240 tacattacagtacaatgcagatactcagctaggcgaattttttttattttgagaattttt 1181
Query: 469 tgttggctttttcttttgcatcttagaaacgtgtgtaggactgagagttttgtgcgaaat 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1180 tgttggctttttcttttgcatcttagaaacgtgtgtaggactgagagttttgtgcgaaat 1121
Query: 529 cttgagtgtgtggactgagaaacggtgaaat-aatggggtctgactaattgtcattgtga 587
||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||
Sbjct: 1120 cttgagtgtgtggactgagaaacggtgaaataaatgtggtctgactaagtgtcattgtga 1061
Query: 588 acgaccgcgacacattaggctgtgccggggccctgtacccttttccacacagtgttaata 647
||||| |||||||| ||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 1060 acgacgccgacacatagggctgtgccgggggcctgtacccttttccacacagtagtaata 1001
Query: 648 ataat-aacattagccttgggggatgttt-accgccttaactggaaactattggtttggc 705
||||| |||||||| ||| || ||||||| || || | ||||| ||||||||||| || |
Sbjct: 1000 ataataaacattag-cttcggtgatgtttaacggcataaactgtaaactattggtatgcc 942
Query: 706 gggccgtatg 715
|| |||||||
Sbjct: 941 ggtccgtatg 932
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8906
Number of Sequences: 1807
Number of extensions: 8906
Number of successful extensions: 498
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)