BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZA09FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig918 1398 0.0
>3x_Contig918
Length = 2482
Score = 1398 bits (705), Expect = 0.0
Identities = 741/751 (98%), Gaps = 2/751 (0%)
Strand = Plus / Plus
Query: 83 gcccaaagattgtccctagaaaatttggatgtcaatttcgataaaagagttattaaagat 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1070 gcccaaagattgtccctagaaaatttggatgtcaatttcgataaaagagttattaaagat 1129
Query: 143 ttagacaaggaatttaacgctgaagactggaccatcggcactttctcaattcctttcgct 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1130 ttagacaaggaatttaacgctgaagactggaccatcggcactttctcaattcctttcgct 1189
Query: 203 cagcctgcttctattgaagaaggcacatatttcttcagagtcgttatcaagtctccagat 262
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1190 cagcctgctcctaaagaagaaggcacatatttcttcagagtcgttatcaagtctccagat 1249
Query: 263 tactttggttctgatttagacttcactgttccattgactgtgaaaaatactccaattgaa 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1250 tactttggttctgatttagacttcactgttccattgactgtgaaaaatactccaattgaa 1309
Query: 323 acagatcctaagaaggagatattggaagaactagactctgacgattcaggaaatgaaggc 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1310 acagatcctaagaaggagatattggaagaactagactctgacgattcaggaaatgaaggc 1369
Query: 383 gaagaaaatactggatattcctccgaagactttgatgaatccgatggtgatgatctagaa 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1370 gaagaaaatactggatattcctccgaagactttgatgaatccgatggtgatgatctagaa 1429
Query: 443 gaggactctgatttcactgatatagatactgatactgaagatgaacatgaagcaactgag 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1430 gaggactctgatttcactgatatagatactgatactgaagatgaacatgaagcaactgag 1489
Query: 503 gaaaccactgaaaaatcctccaagacagattaactttttacttacagttcctaataaatt 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1490 gaaaccactgaaaaatcctccaagacagattaactttttacttacagttcctaataaatt 1549
Query: 563 atctgagcacgcattaaccatcactaaattgacagggcttttcatatgtagatatatatt 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1550 atctgagcacgcattaaccatcactaaattgacagggcttttcatatgtagatatatatt 1609
Query: 623 catactgacttcttatatacaaatgcatcattagatccagtggtattcttgtaatagttt 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1610 catactgacttcttatatacaaatgcatcattagatccagtggtattcttgtaatagttt 1669
Query: 683 tccaaaatgtcaccatccctggaaaagccatttcttctcataccattctattgctgtttc 742
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1670 tccaaaatgtcaccatccctggaaaagcca-ttcttctcataccattctattgctgtttc 1728
Query: 743 attgtcggtggcaacatgcacgtatatatcgngttgaaagctttccttacatttatcttc 802
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1729 attgtcggtggcaacatgcacgtatatatcgtgttgaaagctttccttacatttatcttc 1788
Query: 803 gatattacctcacaattaatgaaccanctgt 833
|||| ||| ||| |||||||||||| ||||
Sbjct: 1789 gata-tacttcaacattaatgaaccagctgt 1818
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6709
Number of Sequences: 1807
Number of extensions: 6709
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)