BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC35ZA09RM1.SCF screened BAC_end
         (903 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1136                                                        1092   0.0  

>3x_Contig1136 
          Length = 5035

 Score = 1092 bits (551), Expect = 0.0
 Identities = 605/618 (97%), Gaps = 4/618 (0%)
 Strand = Plus / Plus

                                                                        
Query: 40   gcttgtggtcatgaccccaaccttgttcaattatgttattgtctcccaccaacaggaaac 99
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1766 gcttgtggtcatgaccccaacctcgttcaattatgttattgtctcccaccaacaggaaac 1825

                                                                        
Query: 100  gacgatgcagcaaattatttcacttcacaccctgtcttcaagcatttgacgttcattggt 159
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1826 gacgatgcagcaaattatttcacttcacaccctgtcttcaagcatttgacgttcattggt 1885

                                                                        
Query: 160  agtaaacctgtcgcacatcacgttttgaaggctgctgcagattctttaaccctttttgtt 219
            ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||
Sbjct: 1886 agtaaacctgtcgcacatcacgttttgaaggctgctgcagattctttaaccccagttgtt 1945

                                                                        
Query: 220  gttgaattgggtggtaaagatgctttcattgttttggattccgtaaaggacttacaagct 279
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1946 gttgaattgggtggtaaagatgctttcattgttttggattccgtaaaggacttacaagct 2005

                                                                        
Query: 280  ctctcttcgattattatgcgtggtactttccaatcggctggtcaaaattgtatcggtatc 339
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2006 ctctcttcgattattatgcgtggtactttccaatcggctggtcaaaattgtatcggtatc 2065

                                                                        
Query: 340  gagagagttatagtttctgccaagaattatgatgcattagtctctattctcaacgataga 399
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2066 gagagagttatagtttctgccaagaattatgatgcattagtctctattctcaacgataga 2125

                                                                        
Query: 400  gtagggcaattgaggttgggatctgatattgataatttagaagatgtcgatatgggtgca 459
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2126 gtagggcaattgaggttgggatctgatattgataatttagaagatgtcgatatgggtgca 2185

                                                                        
Query: 460  atgatttccgacaatagatttggtcaattagaaaatctaatatctgatgcgttgtcaaaa 519
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2186 atgatttccgacaatagatttggtcaattagaaaatctaatatctgatgcgttgtcaaaa 2245

                                                                        
Query: 520  ggtgccaagttattgcatgggggttctcgttacaatcattccaactatcctcaa-gtcac 578
            ||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||
Sbjct: 2246 ggtgccaagttattgcatgggggttctcgttacaatcatccaaactatcctcaaggtcac 2305

                                                                        
Query: 579  tttttcc-acccacgctttt-gtngatgttactgaagatatgcagatctcgcac-atgaa 635
            ||||||| |||||||||||| || |||||||||||||||||||||||||||||| |||||
Sbjct: 2306 tttttccaacccacgcttttggtggatgttactgaagatatgcagatctcgcacaatgaa 2365

                              
Query: 636  atattcggaccatttcta 653
             ||||||||||| |||||
Sbjct: 2366 gtattcggaccaattcta 2383


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6484
Number of Sequences: 1807
Number of extensions: 6484
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)