BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC35ZA09RM1.SCF screened BAC_end (903 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1136 1092 0.0 >3x_Contig1136 Length = 5035 Score = 1092 bits (551), Expect = 0.0 Identities = 605/618 (97%), Gaps = 4/618 (0%) Strand = Plus / Plus Query: 40 gcttgtggtcatgaccccaaccttgttcaattatgttattgtctcccaccaacaggaaac 99 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 1766 gcttgtggtcatgaccccaacctcgttcaattatgttattgtctcccaccaacaggaaac 1825 Query: 100 gacgatgcagcaaattatttcacttcacaccctgtcttcaagcatttgacgttcattggt 159 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1826 gacgatgcagcaaattatttcacttcacaccctgtcttcaagcatttgacgttcattggt 1885 Query: 160 agtaaacctgtcgcacatcacgttttgaaggctgctgcagattctttaaccctttttgtt 219 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1886 agtaaacctgtcgcacatcacgttttgaaggctgctgcagattctttaaccccagttgtt 1945 Query: 220 gttgaattgggtggtaaagatgctttcattgttttggattccgtaaaggacttacaagct 279 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1946 gttgaattgggtggtaaagatgctttcattgttttggattccgtaaaggacttacaagct 2005 Query: 280 ctctcttcgattattatgcgtggtactttccaatcggctggtcaaaattgtatcggtatc 339 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2006 ctctcttcgattattatgcgtggtactttccaatcggctggtcaaaattgtatcggtatc 2065 Query: 340 gagagagttatagtttctgccaagaattatgatgcattagtctctattctcaacgataga 399 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2066 gagagagttatagtttctgccaagaattatgatgcattagtctctattctcaacgataga 2125 Query: 400 gtagggcaattgaggttgggatctgatattgataatttagaagatgtcgatatgggtgca 459 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2126 gtagggcaattgaggttgggatctgatattgataatttagaagatgtcgatatgggtgca 2185 Query: 460 atgatttccgacaatagatttggtcaattagaaaatctaatatctgatgcgttgtcaaaa 519 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2186 atgatttccgacaatagatttggtcaattagaaaatctaatatctgatgcgttgtcaaaa 2245 Query: 520 ggtgccaagttattgcatgggggttctcgttacaatcattccaactatcctcaa-gtcac 578 ||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||| Sbjct: 2246 ggtgccaagttattgcatgggggttctcgttacaatcatccaaactatcctcaaggtcac 2305 Query: 579 tttttcc-acccacgctttt-gtngatgttactgaagatatgcagatctcgcac-atgaa 635 ||||||| |||||||||||| || |||||||||||||||||||||||||||||| ||||| Sbjct: 2306 tttttccaacccacgcttttggtggatgttactgaagatatgcagatctcgcacaatgaa 2365 Query: 636 atattcggaccatttcta 653 ||||||||||| ||||| Sbjct: 2366 gtattcggaccaattcta 2383 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6484 Number of Sequences: 1807 Number of extensions: 6484 Number of successful extensions: 43 Number of sequences better than 1.0e-20: 1 length of query: 903 length of database: 10,358,551 effective HSP length: 16 effective length of query: 887 effective length of database: 10,329,639 effective search space: 9162389793 effective search space used: 9162389793 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)