BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZA11FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig613 1118 0.0
>3x_Contig613
Length = 1854
Score = 1118 bits (564), Expect = 0.0
Identities = 650/676 (96%), Gaps = 2/676 (0%)
Strand = Plus / Minus
Query: 86 tatcatccgtttcatcaacaataaaagaagaatgtcctttaccagcatcaaactagcaga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1310 tatcatccgtttcatcaacaataaaagaagaatgtcctttaccagcatcaaactagcaga 1251
Query: 146 tggtactgagtaccaacaacctttaggtttattcattaacaatgaatatgttgaagcaca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1250 tggtactgagtaccaacaacctttaggtttattcattaacaatgaatatgttgaagcaca 1191
Query: 206 tggttcggatattttattatcatataacccaagttctggtgaagaaatctgcaaagttca 265
||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1190 tggttcggagactttaacatcatataacccaagttctggtgaagaaatctgcaaagttca 1131
Query: 266 atgtgcagacccaaagattgatgtcgatttggctgttaaggctgcaagagacgcttttcc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1130 atgtgcagacccaaagattgatgtcgatttggctgttaaggctgcaagagacgcttttcc 1071
Query: 326 tggttggaaagcgactccagctatagaaaagagagacttgttctacaaattggccggctt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1070 tggttggaaagcgactccagctatagaaaagagagacttgttctacaaattggccggctt 1011
Query: 386 gttggaaagagatattgacatattaagtaaaatcgagtccctggacactggaaagccaat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 gttggaaagagatattgacatattaagtaaaatcgagtccctggacactggaaagccaat 951
Query: 446 tgccaacaatgccaagtacgacatactataagtggttgaggtcttaaagtactatgctgg 505
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 950 tgccaacaatgccaagtacgacatactagaagtggttgaggtcttaaagtactatgctgg 891
Query: 506 atggatcgataaggcaggtggtcaatctttcgctccaagcagtgaaaagttagcttatac 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 atggatcgataaggcaggtggtcaatctttcgctccaagcagtgaaaagttagcttatac 831
Query: 566 tttacatcagccattaagcgtgtttggatgtattatcccattcaactattcattgggcta 625
|||||||||||||||| ||||| |||||||||||||||||||||||||| |||| |||||
Sbjct: 830 tttacatcagccattaggcgtggttggatgtattatcccattcaactatccatt-ggcta 772
Query: 626 tgatgtcttggaaatggactggttttcccccttgggaacacaactgtttttaaatttgcg 685
|||||||||||||||||||| | | || || ||||||||||||||||||||||| ||||
Sbjct: 771 tgatgtcttggaaatggact-gctatcgccactgggaacacaactgtttttaaatctgcg 713
Query: 686 gttcagactccatttttcatcctttttttcgccaaattggtgaaagaaactgggttccct 745
| |||||||||||| | |||||| | |||||||||||||||||| ||| | |||||||||
Sbjct: 712 gatcagactccattatccatcctatatttcgccaaattggtgaaggaagcagggttccct 653
Query: 746 gccggggttttcaatg 761
|| || ||||||||||
Sbjct: 652 gcaggtgttttcaatg 637
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6686
Number of Sequences: 1807
Number of extensions: 6686
Number of successful extensions: 25
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)