BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZA11RM1.SCF screened BAC_end
(965 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1692 1148 0.0
>3x_Contig1692
Length = 16448
Score = 1148 bits (579), Expect = 0.0
Identities = 705/738 (95%), Gaps = 8/738 (1%)
Strand = Plus / Plus
Query: 57 accaaactttgttaagtattaatctaactactatatccactaaggaacaggagaagaata 116
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 6064 accaaactttgttaagaag-aatctaactactatatccactaaggaacaggagaagaata 6122
Query: 117 atacactctcgtcgcttaatttttccaaatacaactggggtatttacaaagaatgtaccc 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6123 atacactctcgtcgcttaatttttccaaatacaactggggtatttacaaagaatgtaccc 6182
Query: 177 gtttagaggatcacatatcgagatttggaacctatacaggtttcctatttattaatggaa 236
||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||
Sbjct: 6183 gtttagaggatcacatatcgagatttggaacctatacaggtttcctaaatatgaagggaa 6242
Query: 237 aacttctcactgattcaattatttatccatatcccttcacccttaaaagtattcaagata 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6243 aacttctcactgattcaattatttatccatatcccttcacccttaaaagtattcaagata 6302
Query: 297 agaaattccctgagtacctcatggaatttgatagccatatagcgcaaaaaatggagcgca 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6303 agaaattccctgagtacctcatggaatttgatagccatatagcgcaaaaaatggagcgca 6362
Query: 357 cattggataatcacaaactactgagcaaagtgaagtttaaacatgtacagaatgaggaac 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6363 cattggataatcacaaactactgagcaaagtgaagtttaaacatgtacagaatgaggaac 6422
Query: 417 tacgaacctgggatgcatatatcaccatgcccgaagaatatcaattattagaaaacctat 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6423 tacgaacctgggatgcatatatcaccatgcccgaagaatatcaattattagaaaacctat 6482
Query: 477 taaatccaatgcaagagatgaaagatggggaacaggctctttattttgctaacttctttg 536
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 6483 taaatccaatgcaagagatgaaagatggggaacaggctcttcattttgctaacttctttg 6542
Query: 537 ccttgatgttcttccaaggaaatgagcat-aattgaaagcggtgtactttgacacccgtc 595
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 6543 cctcgatgttcttccaaggaaatgagcataaattgaaagcggtgtactttgacacccgtc 6602
Query: 596 tgatcgatgacatgtatgaaggttaaatcaagcttatgtttcggattgtaacagataaat 655
||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||| |
Sbjct: 6603 tgatcgatgacatgtatgaaggtaaaatcaagcctatgttccggattgtaacagataatt 6662
Query: 656 cggtatctgacatttatgacatattttatttgcacagcattttgcgaaaaacccattccg 715
|||||||||||||| |||||||| |||| ||||||||||||| ||| |||||||||| ||
Sbjct: 6663 cggtatctgacattaatgacata-tttaattgcacagcatttggcg-aaaacccatt-cg 6719
Query: 716 aaaaggccaatttttaaccttctgaaattcaaaaagaaaggaatttaattttggccttct 775
||||||||||| | | | || |||| ||||||||||| || |||||| ||||||| |||
Sbjct: 6720 aaaaggccaatatatcagctactgagattcaaaaagagag--atttaaatttggcc-tct 6776
Query: 776 tggattggaaccatgaat 793
| ||| ||||||||||||
Sbjct: 6777 ttgatgggaaccatgaat 6794
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8594
Number of Sequences: 1807
Number of extensions: 8594
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)