BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZA12FM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1174 1310 0.0
>3x_Contig1174
Length = 6106
Score = 1310 bits (661), Expect = 0.0
Identities = 741/761 (97%), Gaps = 5/761 (0%)
Strand = Plus / Plus
Query: 84 tgaaaagaataaaagaaagcgctgctagcaaacgcacaagggaagatgattgttctgacg 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1630 tgaaaagaataaaagaaagcgctgctagcaaacgcacaagggaagatgattgttctgacg 1689
Query: 144 atttggagaaacaatcaattatattggaatccgaacaggagcctcagagcaagaagacct 203
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1690 atttggagaaacaatcaattatatgggaatccgaacaggagcctcagagcaagaagacct 1749
Query: 204 attctccatcagatggggaaacgtttagtcaaaaaatgaacttggattcagcaagacctg 263
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1750 attctccattagatgttgaaacgtttagtcaaaaaatgaacttggattcagcaagacctg 1809
Query: 264 actcgaagactttatcgttcatccagactcttcaaaagcttttagagtctgagcaacaat 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1810 actcgaagactttatcgttcatccagactcttcaaaagcttttagagtctgagcaacaat 1869
Query: 324 acttcgaaatgttgagtctatgtttatcaacttacaaggaagaagcatgccacaacaaga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1870 acttcgaaatgttgagtctatgtttatcaacttacaaggaagaagcatgccacaacaaga 1929
Query: 384 aatttaggaacaaattgttgaatagagcttcaaacgatgagctattgttgtttgggaatt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1930 aatttaggaacaaattgttgaatagagcttcaaacgatgagctattgttgtttgggaatt 1989
Query: 444 tagatacgatggcagagttaagtaaattattctgcaaaaatttatcagaatgcttgaaag 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1990 tagatacgatggcagagttaagtaaattattctgcaaaaatttatcagaatgcttgaaag 2049
Query: 504 tgacagatgctggtactcagagcaggatttggaaggaaattaaagggagtgacaagttat 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2050 tgacagatgctggtactcagagcaggatttggaaggaaattaaagggagtgacaagttat 2109
Query: 564 gtcaaattatacttgatactgatttctctacgttgataaaatctcatttacatagaatca 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2110 gtcaaattatacttgatactgatttctctacgttgataaaatctcatttacatagaatca 2169
Query: 624 agtccccatatcatagctactgcatctgtcatgaggaaaggaaacgatttctagactcga 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2170 agtccccatatcatagctactgcatctgtcatgaggaaaggaaacgatttctagactcga 2229
Query: 684 tcaaattgcaaaacacggaaacgttttacaagtggtacgagttattgctt-ataaaatca 742
|||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||
Sbjct: 2230 tcaaattgcaaaacacggaaacgttttacaagtggtacgagtta-tgcttaaaaaaatca 2288
Query: 743 catttggagaagttagaaaacctctttgaattgccctttggagaggcttaggccaagggg 802
|| || |||||||||||| ||||||| || ||| || |||||||||| |||||||| |||
Sbjct: 2289 caatttgagaagttagaagacctcttggagttg-ccattggagaggc-taggccaatggg 2346
Query: 803 ggtcattggttcaggaacttatgtttatttggggacaattt 843
||||||| |||| |||||||||||||||||| ||||||||
Sbjct: 2347 ggtcatt-gttcgagaacttatgtttatttggtgacaattt 2386
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7424
Number of Sequences: 1807
Number of extensions: 7424
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)