BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZA12RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1227 1215 0.0
>3x_Contig1227
Length = 6330
Score = 1215 bits (613), Expect = 0.0
Identities = 686/706 (97%), Gaps = 4/706 (0%)
Strand = Plus / Minus
Query: 48 tttcttccattcaactaatctagcaaaatcttggttttcttcattacctgaatgggatac 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3374 tttcttccattcaactaatctagcaaaatcttggttttcttcattacctgaatgggatac 3315
Query: 108 gtcccaggatcctacagtcattaatccattcaaactaacatgcttggcctccttgataag 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3314 gtcccaggatcctacagtcattaatccattcaaactaacatgcttggcctccttgataag 3255
Query: 168 atattcaacaatcgaatacacctctacttctgcgaacaatccggatttttgttcctctcc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3254 atattcaacaatcgaatacacctctacttctgcgaacaatccggatttttgttcctctcc 3195
Query: 228 agaagtgttgatctgaacattacacgtgatcacgggtgcatccgggttccacttccctct 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3194 agaagtgttgatctgaacattacacgtgatcacgggtgcatccgggttccacttccctct 3135
Query: 288 ggcttcttccaacttcttcgccttctttaacgaatcaacggtctctaccgagtaaaggtt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3134 ggcttcttccaacttcttcgccttctttaacgaatcaacggtctctaccgagtaaaggtt 3075
Query: 348 cgcaatcttagccaaatccttgcatttgttactttgcaaaccgccgatgaaatgccattt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3074 cgcaatcttagccaaatccttgcatttgttactttgcaaaccgccgatgaaatgccattt 3015
Query: 408 aatatcctggggtaaaatctcactcttcgtaatcatctcttgaacgtagttttccccaaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3014 aatatcctggggtaaaatctcactcttcgtaatcatctcttgaacgtagttttccccaaa 2955
Query: 468 gtgtctcacaccataatcatacaaaattttgatgtctgcagcaagcttatacttggaaac 527
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2954 gtgtctcacaccataatcatacaaaattttgatgtctgcagcaggcttatacttggaaac 2895
Query: 528 agctagtaatttcacgttaacattaccgacttnctgagcagtggcattgatcttatcttt 587
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 2894 agctagtaattcaacgttaacattaccgacttcctgagcagtggcattgatcttatcttt 2835
Query: 588 catcgnctgataagccccaatcagctnctcttttctcacagcatcgtaactgatatcact 647
||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 2834 catcgtctgataagccccaatcagctcttctttcctcacagcatcgtaactgatatcact 2775
Query: 648 agacatttctcttgctactataagtcccctgcgattcattcaaaagcccttttaatttgg 707
||||||| |||||||||||| |||||||||||| |||||||||||| | | |||| |||
Sbjct: 2774 agacattcttcttgctactatcagtcccctgcgaatcattcaaaagcac-tataatatgg 2716
Query: 708 gtaaaaccacaaatttaaaggaagtggctcatcaccttaatcttat 753
||||||||| |||||||||| |||| |||||||| |||||||||||
Sbjct: 2715 gtaaaacca-aaatttaaagtaagt-gctcatca-cttaatcttat 2673
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,299
Number of Sequences: 1807
Number of extensions: 12299
Number of successful extensions: 93
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)