BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZB01FM1.SCF screened BAC_end
(876 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1610 1505 0.0
>3x_Contig1610
Length = 13981
Score = 1505 bits (759), Expect = 0.0
Identities = 781/787 (99%), Gaps = 1/787 (0%)
Strand = Plus / Plus
Query: 86 caaagaatttctttccttcacatctatttatcaaacaaaaacaactagaaaacatttcgt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3281 caaagaatttctttccttcacatctatttatcaaacaaaaacaactagaaaacatttcgt 3340
Query: 146 aaacaaaagaacttaggatccaagaaacagggaaacatttcactttgtatccttgcgttt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3341 aaacaaaagaacttaggatccaagaaacagggaaacatttcactttgtatccttgcgttt 3400
Query: 206 aggtgtcttgtgcaagggagaacggttcgtgagacacttgatcgagagttcatactcaga 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3401 aggtgtcttgtgcaagggagaacggttcgtgagacacttgatcgagagttcatactcaga 3460
Query: 266 aactcgttagtaggcgccgaataattacagaataaaggaagatctaacgtcgctattcga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3461 aactcgttagtaggcgccgaataattacagaataaaggaagatctaacgtcgctattcga 3520
Query: 326 tatactgatacttttataaagtgaaccaagtgtgaaaatttattatttgccgtttgctgt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3521 tatactgatacttttataaagtgaaccaagtgtgaaaatttattatttgccgtttgctgt 3580
Query: 386 tgcagttccttgttttatttctataattttggagactgactattgaaacgacccgctagg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3581 tgcagttccttgttttatttctataattttggagactgactattgaaacgacccgctagg 3640
Query: 446 atttggaaacactagtaagttataataccctttacaaatcgttatgtcagcttccgaggt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3641 atttggaaacactagtaagttataataccctttacaaatcgttatgtcagcttccgaggt 3700
Query: 506 tgcccagtttttggaaaacattatcattactccggacccaacggtccgtcttcaagcgga 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3701 tgcccagtttttggaaaacattatcattactccggacccaacggtccgtcttcaagcgga 3760
Query: 566 gacgacgttgaagaaattatctaacgataatttcttgcaattcgctggacttttgtctca 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3761 gacgacgttgaagaaattatctaacgataatttcttgcaattcgctggacttttgtctca 3820
Query: 626 gatcttggccgatgtgtccgttcgtcttgaagctagaattctagcaggtttgacgttgaa 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3821 gatcttggccgatgtgtccgttcgtcttgaagctagaattctagcaggtttgacgttgaa 3880
Query: 686 gaacgaattgatttcgaagaacccaacaaaggcccagcagtttgctcaacgttggtctac 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3881 gaacgaattgatttcgaagaacccaacaaaggcccagcagtttgctcaacgttggtctac 3940
Query: 746 gcaagtcgatgcagagtctagacatcatattaagcagtttgcgttacaagcgttgggttg 805
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 3941 gcaagtcgatgcagagtctagacatcatattaagcagtttgcgttacaagcgtt-ggttg 3999
Query: 806 atccataaactcgtgttggcaacgcttcagctcatttgatcgctgccattgcagaaatcg 865
||||| | |||||||||| ||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 4000 atccagagactcgtgttgccaacgcttcagctcagttgatcgctgccattgcagagatcg 4059
Query: 866 aattgcc 872
|||||||
Sbjct: 4060 aattgcc 4066
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6063
Number of Sequences: 1807
Number of extensions: 6063
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 876
length of database: 10,358,551
effective HSP length: 16
effective length of query: 860
effective length of database: 10,329,639
effective search space: 8883489540
effective search space used: 8883489540
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)