BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZB01RM1.SCF screened BAC_end
(878 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1278 1524 0.0
>3x_Contig1278
Length = 6932
Score = 1524 bits (769), Expect = 0.0
Identities = 800/808 (99%), Gaps = 2/808 (0%)
Strand = Plus / Plus
Query: 48 gaagaaccaagattggatttctgtaaatgggaaaaccatgtcacgaagtcgtgagatacg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1652 gaagaaccaagattggatttctgtaaatgggaaaaccatgtcacgaagtcgtgagatacg 1711
Query: 108 agcctcccattacctattcaaaatcagaggttattcatggaagtcagccctccgagatat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1712 agcctcccattacctattcaaaatcagaggttattcatggaagtcagccctccgagatat 1771
Query: 168 cacacatgttctagttcgtcaccagactggaaaagtctgttgccggcactgcctgggaac 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1772 cacacatgttctagttcgtcaccagactggaaaagtctgttgccggcactgcctgggaac 1831
Query: 228 gggaaatatagagagcaaagagatttgaaggaagggttttgctatccctaggatgattcg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1832 gggaaatatagagagcaaagagatttgaaggaagggttttgctatccctaggatgattcg 1891
Query: 288 caagaacggatcacgctatgtttgggcaaggtgacacaaaaaaaagccataggg-atagt 346
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1892 caagaacggatcacgctatgtttgggcaaggtgacacaaaaaaaagccataggggatagt 1951
Query: 347 ttgcagggtgcacgggagttccgtttccatggattatgtaagtgcttcggtgcgtggacc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1952 ttgcagggtgcacgggagttccgtttccatggattatgtaagtgcttcggtgcgtggacc 2011
Query: 407 tcgaagtcttatgcggatgcaggacgttactttagtacaggaatattcgtgttccgtgat 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2012 tcgaagtcttatgcggatgcaggacgttactttagtacaggaatattcgtgttccgtgat 2071
Query: 467 ttagttttttttttttttctctagaacaattggtttcctgtacgagccgggctttctgca 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2072 ttagttttttttttttttctctagaacaattggtttcctgtacgagccgggctttctgca 2131
Query: 527 tgtcgttttccatccttgatctctccactttggtttttgtggagaattagtggagagaca 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2132 tgtcgttttccatccttgatctctccactttggtttttgtggagaattagtggagagaca 2191
Query: 587 ttcaagagaaaaaggacgtgtgacattcggaggggaaaatgaaaaagtatcccaactgac 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2192 ttcaagagaaaaaggacgtgtgacattcggaggggaaaatgaaaaagtatcccaactgac 2251
Query: 647 aatctatatacaatggatccgtgttgtgccctgccagactttactgttagcttangtgct 706
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2252 aatctatatacaatggatccgtgttgtgccctgccagactttactgttagcttaggtgct 2311
Query: 707 ttattcgtcatagtggccttagaggtaatgtttcttcgtctttgttgttcaacggcgttg 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2312 ttattcgtcatagtggccttagaggtaatgtttcttcgtctttgttgttcaacggcgttg 2371
Query: 767 tacgggcatctatagcccgccacttattggaagt-atgcagtatgttagggcagaaacct 825
||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||
Sbjct: 2372 tacgggcatctatagcccgccactttatggaagtaatgcagaatgttagggcagaaacct 2431
Query: 826 ttataactttaatcaaggccccaacagc 853
||||||||||||||||||| |||||||
Sbjct: 2432 ctataactttaatcaaggccacaacagc 2459
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,318
Number of Sequences: 1807
Number of extensions: 13318
Number of successful extensions: 319
Number of sequences better than 1.0e-20: 1
length of query: 878
length of database: 10,358,551
effective HSP length: 16
effective length of query: 862
effective length of database: 10,329,639
effective search space: 8904148818
effective search space used: 8904148818
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)