BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZB03FM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1370 1540 0.0
>3x_Contig1370
Length = 5848
Score = 1540 bits (777), Expect = 0.0
Identities = 845/866 (97%), Gaps = 3/866 (0%)
Strand = Plus / Plus
Query: 86 ccgggtctagcgaaagtattagatgtcattgaaccatccacagataaagtctacatcatc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1878 ccgggtctagcgaaagtattagatgtcattgaaccatccacagataaagtctacatcatc 1937
Query: 146 accgaaagaattactgctcttaactcattggattattttaacttcaatgaaaatgctttg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1938 accgaaagaattactgctcttaactcattggattattttaacttcaatgaaaatgctttg 1997
Query: 206 aaacttggtatctatgaaatagcactgacgttgaacgttttacatcaacaaggcaagtca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1998 aaacttggtatctatgaaatagcactgacgttgaacgttttacatcaacaaggcaagtca 2057
Query: 266 cttttcggtgcattgtgtttaggtaatgtctatgtcaacagtaaaggtgaatgggtatta 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2058 cttttcggtgcattgtgtttaggtaatgtctatgtcaacagtaaaggtgaatgggtatta 2117
Query: 326 tatgcattggagctatcgaccagcttgaacgatacaaaccatttcacgtccaatatccag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2118 tatgcattggagctatcgaccagcttgaacgatacaaaccatttcacgtccaatatccag 2177
Query: 386 acctataacgatgttgtgaggggctatgacgattggcagttgggaaatgggtcagcttca 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2178 acctataacgatgttgtgaggggctatgacgattggcagttgggaaatgggtcagcttca 2237
Query: 446 aacattgactccatacaactggcgaactttttcaataaacttttaacaaatagaatatct 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2238 aacattgactccatacaactggcgaactttttcaataaacttttaacaaatagaatatct 2297
Query: 506 tccagctggaagccagtcatatcacagcttgcaaagggtcaaccaggtgctattggtaag 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2298 tccagctggaagccagtcatatcacagcttgcaaagggtcaaccaggtgctattggtaag 2357
Query: 566 cttatcagcaaaatgcagactgatgcagaaaatcctttgatatccatatacgataaccta 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2358 cttatcagcaaaatgcagactgatgcagaaaatcctttgatatccatatacgataaccta 2417
Query: 626 aaggagattcatattaaggactcagcagataaagttatgatactttccaatatccaacaa 685
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2418 aaggagattcatattaaggactcagcagataaagttatgatactttccaatatccaacag 2477
Query: 686 aaaattactgccgatgatgcatcctttcaaaattgcacaccagggttcttggagtattta 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2478 aaaattactgccgatgatgcatcctttcaaaattgcacaccagggttcttggagtattta 2537
Query: 746 ttgctaccgnagttaattcaatgtctacaattacttgctgccacaaatcaaccgatatca 805
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2538 ttgctaccggagttaattcaatgtctacaattacttgctgccacaaatcaaccgatatca 2597
Query: 806 agtcaagtgccctttcntcgcactatattccacctaacatgttctgataagtccattatt 865
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 2598 agtcaagtgccctttctcggcactatattccacctaacatgttctgatagtcccattata 2657
Query: 866 gccaatgaagaacgtttccaaaatcagatcaaaacggttgattttttcattctttcaatg 925
||||||||||| ||||||||| ||||||||| || | | ||||||| ||||||||||
Sbjct: 2658 gccaatgaagacgttttccaaaaccagatcaaaccg--ttaatttttcaatctttcaatg 2715
Query: 926 taagccgacagacaagttaggttctt 951
| |||||||||||| |||||||||||
Sbjct: 2716 t-agccgacagacaggttaggttctt 2740
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6755
Number of Sequences: 1807
Number of extensions: 6755
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)