BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC35ZB03RM1.SCF screened BAC_end
         (978 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig565                                                         1164   0.0  

>3x_Contig565 
          Length = 3548

 Score = 1164 bits (587), Expect = 0.0
 Identities = 649/662 (98%), Gaps = 6/662 (0%)
 Strand = Plus / Plus

                                                                       
Query: 123 aattgattcaacagctaagaactcaatccaacggtactggccgtgaagattccgaaacag 182
           |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 7   aattgatt-aacagctaagaactcaatcca-cggtactggccgtgaagattccgaaacag 64

                                                                       
Query: 183 cacttgtttccagagattcaaagaaacaagaagttcaaacaagtggccgttctttgagag 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  cacttgtttccagagattcaaagaaacaagaagttcaaacaagtggccgttctttgagag 124

                                                                       
Query: 243 aagttgtcttagatgaacctatcagatacgctcctggtgacccagttgaaaaatggttga 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 aagttgtcttagatgaacctatcagatacgctcctggtgacccagttgaaaaatggttga 184

                                                                       
Query: 303 ataaattactttgtttggacgttcaactaatcaaaaatccaagatttgctgctagaggca 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ataaattactttgtttggacgttcaactaatcaaaaatccaagatttgctgctagaggca 244

                                                                       
Query: 363 cacctcatccatctcaatgtaatttattcatcgtcaatagagatactctattttcttatc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cacctcatccatctcaatgtaatttattcatcgtcaatagagatactctattttcttatc 304

                                                                       
Query: 423 atcctgtttctgaaaattttctggagaagatgatggctctttatgtcgcatcgcattaca 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 atcctgtttctgaaaattttctggagaagatgatggctctttatgtcgcatcgcattaca 364

                                                                       
Query: 483 agaattctcctaacgacttgcaattaatgagtgatgcacctgctcatcaactattcgttt 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 agaattctcctaacgacttgcaattaatgagtgatgcacctgctcatcaactattcgttt 424

                                                                       
Query: 543 tattgcctcccatcgatccaaaagatggcggcagaatacctgatcccttagtggtcatcc 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tattgcctcccatcgatccaaaagatggcggcagaatacctgatcccttagtggtcatcc 484

                                                                       
Query: 603 aggtcgcattggaaggtgagatctcgaaagattctgtcagaaattctttggcaagaagtc 662
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 485 aggtcgcattggaaggtgagatctcgaaggattctgtcagaaattctttggcaagaggtc 544

                                                                       
Query: 663 anagagctggtggtgacttaattccatggctaatctcacagcattttcaagatgaagaat 722
           | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 545 aaagagctggtggtgacttaattccatggctaatctcacagcaatttcaagatgaagaat 604

                                                                       
Query: 723 ttgcccgttttgagtggtgccccgtgttgtttaggattgcaacaattccgggaatacgcc 782
           ||| ||| ||||||||||| ||||||||| ||||||||||||| | ||| ||||||||||
Sbjct: 605 ttg-ccggtttgagtggtg-cccgtgttg-ttaggattgcaaccaatcc-ggaatacgcc 660

             
Query: 783 tc 784
           ||
Sbjct: 661 tc 662


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7578
Number of Sequences: 1807
Number of extensions: 7578
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 978
length of database: 10,358,551
effective HSP length: 16
effective length of query: 962
effective length of database: 10,329,639
effective search space: 9937112718
effective search space used: 9937112718
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)