BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC35ZB03RM1.SCF screened BAC_end (978 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig565 1164 0.0 >3x_Contig565 Length = 3548 Score = 1164 bits (587), Expect = 0.0 Identities = 649/662 (98%), Gaps = 6/662 (0%) Strand = Plus / Plus Query: 123 aattgattcaacagctaagaactcaatccaacggtactggccgtgaagattccgaaacag 182 |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 7 aattgatt-aacagctaagaactcaatcca-cggtactggccgtgaagattccgaaacag 64 Query: 183 cacttgtttccagagattcaaagaaacaagaagttcaaacaagtggccgttctttgagag 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 65 cacttgtttccagagattcaaagaaacaagaagttcaaacaagtggccgttctttgagag 124 Query: 243 aagttgtcttagatgaacctatcagatacgctcctggtgacccagttgaaaaatggttga 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 125 aagttgtcttagatgaacctatcagatacgctcctggtgacccagttgaaaaatggttga 184 Query: 303 ataaattactttgtttggacgttcaactaatcaaaaatccaagatttgctgctagaggca 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 185 ataaattactttgtttggacgttcaactaatcaaaaatccaagatttgctgctagaggca 244 Query: 363 cacctcatccatctcaatgtaatttattcatcgtcaatagagatactctattttcttatc 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 245 cacctcatccatctcaatgtaatttattcatcgtcaatagagatactctattttcttatc 304 Query: 423 atcctgtttctgaaaattttctggagaagatgatggctctttatgtcgcatcgcattaca 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 305 atcctgtttctgaaaattttctggagaagatgatggctctttatgtcgcatcgcattaca 364 Query: 483 agaattctcctaacgacttgcaattaatgagtgatgcacctgctcatcaactattcgttt 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 365 agaattctcctaacgacttgcaattaatgagtgatgcacctgctcatcaactattcgttt 424 Query: 543 tattgcctcccatcgatccaaaagatggcggcagaatacctgatcccttagtggtcatcc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 425 tattgcctcccatcgatccaaaagatggcggcagaatacctgatcccttagtggtcatcc 484 Query: 603 aggtcgcattggaaggtgagatctcgaaagattctgtcagaaattctttggcaagaagtc 662 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 485 aggtcgcattggaaggtgagatctcgaaggattctgtcagaaattctttggcaagaggtc 544 Query: 663 anagagctggtggtgacttaattccatggctaatctcacagcattttcaagatgaagaat 722 | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 545 aaagagctggtggtgacttaattccatggctaatctcacagcaatttcaagatgaagaat 604 Query: 723 ttgcccgttttgagtggtgccccgtgttgtttaggattgcaacaattccgggaatacgcc 782 ||| ||| ||||||||||| ||||||||| ||||||||||||| | ||| |||||||||| Sbjct: 605 ttg-ccggtttgagtggtg-cccgtgttg-ttaggattgcaaccaatcc-ggaatacgcc 660 Query: 783 tc 784 || Sbjct: 661 tc 662 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7578 Number of Sequences: 1807 Number of extensions: 7578 Number of successful extensions: 47 Number of sequences better than 1.0e-20: 1 length of query: 978 length of database: 10,358,551 effective HSP length: 16 effective length of query: 962 effective length of database: 10,329,639 effective search space: 9937112718 effective search space used: 9937112718 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)