BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZB04FM1.SCF screened BAC_end
(883 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1654 615 e-176
3x_Contig466 434 e-121
>3x_Contig1654
Length = 17174
Score = 615 bits (310), Expect = e-176
Identities = 310/310 (100%)
Strand = Plus / Plus
Query: 87 agctttctccgcagattctgtaattcaatctgtacggatggatgcatttggtactgctga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16865 agctttctccgcagattctgtaattcaatctgtacggatggatgcatttggtactgctga 16924
Query: 147 tattgagttgcgtcacgtccaaggccattattcatggccaaagtaaataccatctcagtg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16925 tattgagttgcgtcacgtccaaggccattattcatggccaaagtaaataccatctcagtg 16984
Query: 207 actatatcagtcgcccttccgaagacactgtcatcatcaccattgccgacacaaaaaaaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16985 actatatcagtcgcccttccgaagacactgtcatcatcaccattgccgacacaaaaaaaa 17044
Query: 267 ttccaaatgaaaagcatacatgaaatttgtacttcgtttgtaccactgaaaatgcacatt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17045 ttccaaatgaaaagcatacatgaaatttgtacttcgtttgtaccactgaaaatgcacatt 17104
Query: 327 ttagccaagcatatttcggcaaatacaatacattgatctactacgggattttgtttgatg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17105 ttagccaagcatatttcggcaaatacaatacattgatctactacgggattttgtttgatg 17164
Query: 387 aaatcagaat 396
||||||||||
Sbjct: 17165 aaatcagaat 17174
>3x_Contig466
Length = 1846
Score = 434 bits (219), Expect = e-121
Identities = 312/331 (94%), Gaps = 11/331 (3%)
Strand = Plus / Minus
Query: 544 cggaatcatctactaatattttatccaacgtttcttcgaacattccaatatcaaaatatg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1325 cggaatcatctactaatattttatccaacgtttcttcgaacattccaatatcaaaatatg 1266
Query: 604 gataaatgtggtaaagccttctgtaaaagtatgacttgtacaacaataaagcatctttct 663
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1265 gataaatgtggtaaagccttctgtaaaagtatgacttgtacaacaataaggcatctttct 1206
Query: 664 ttggtaataaaatatttgcctcggaaactagtctttct-ataacggcgggcacgggtcct 722
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1205 ttggtaataaaatatttgcctcggaaactagtctttctaataacggcgggcacgggtcct 1146
Query: 723 cttgc-ttttggaatcttcaaactt-ccctgnaagaagaca-tcctcaacat-gtaacca 778
||||| ||||||||||||||||||| ||||| ||||||||| |||||||||| ||||| |
Sbjct: 1145 cttgctttttggaatcttcaaacttaccctggaagaagacattcctcaacatggtaacaa 1086
Query: 779 aaaatgccgtgcggtagttaacaagtacctcncctttctggtnaatagnctatccgggga 838
|||||||||||||||||||||||||||| || |||| || || ||||| |||||| | ||
Sbjct: 1085 aaaatgccgtgcggtagttaacaagtacttc-ccttcct-gttaatagtctatcc-gtga 1029
Query: 839 aatcttgnaatacgatttgggattgtgcttc 869
||||||| ||||||||| ||||||||||||
Sbjct: 1028 aatcttg-aatacgatt--ggattgtgcttc 1001
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5888
Number of Sequences: 1807
Number of extensions: 5888
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 2
length of query: 883
length of database: 10,358,551
effective HSP length: 16
effective length of query: 867
effective length of database: 10,329,639
effective search space: 8955797013
effective search space used: 8955797013
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)