BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZB04RM1.SCF screened BAC_end
(890 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1016 1413 0.0
>3x_Contig1016
Length = 4444
Score = 1413 bits (713), Expect = 0.0
Identities = 776/792 (97%), Gaps = 4/792 (0%)
Strand = Plus / Minus
Query: 48 atagatataggtatgatcagcaacagcggtatcgtagcatcctcacacgatttaggttcg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2635 atagatataggtatgatcagcaacagcggtatcgtagcatcctcacacgatttaggttcg 2576
Query: 108 agctatgtgcaagatcaaagagaaattttacatgacgtacccttaacggtacttcccagt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2575 agctatgtgcaagatcaaagagaaattttacatgacgtacccttaacggtacttcccagt 2516
Query: 168 tcgaaaataaaacaggacacaaggaaggcgattcaagaatttcacaaaaagtacttcgct 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2515 tcgaaaataaaacaggacacaaggaaggcgattcaagaatttcacaaaaagtacttcgct 2456
Query: 228 aacctagtgaaaaaccttaccgtggaatataacaagccattggtcgccaatatcgaatcg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2455 aacctagtgaaaaaccttaccgtggaatataacaagccattggtcgccaatatcgaatcg 2396
Query: 288 tgacgcaataggtttctgcactattagcgcactcaaaatgggttcaccaaatgttgaaat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2395 tgacgcaataggtttctgcactattagcgcactcaaaatgggttcaccaaatgttgaaat 2336
Query: 348 gcgatatatcactatatacgtctgaacatttctcaatcttgtaaaggtactttcactctc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2335 gcgatatatcactatatacgtctgaacatttctcaatcttgtaaaggtactttcactctc 2276
Query: 408 tttattgaaaacattgaaatatacaaactttgtagaatagacatataaaacaatacgcag 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2275 tttattgaaaacattgaaatatacaaactttgtagaatagacatataaaacaatacgcag 2216
Query: 468 tatacgattttggtttgtcaaaggagccaattaggtacggttagagtaagtgccttgact 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2215 tatacgattttggtttgtcaaaggagccaattaggtacggttagagtaagtgccttgact 2156
Query: 528 gctgcatatatactgaaatttgttcatttaagaagccaaggaagcgaggaggcaaaaaaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2155 gctgcatatatactgaaatttgttcatttaagaagccaaggaagcgaggaggcaaaaaaa 2096
Query: 588 aaagcataaacaaactggaaagcgccaaatactatggctgtgaaaagaagcagatcagaa 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2095 aaagcataaacaaactggaaagcgccaaatactatggctgtgaaaagaagcagatcagaa 2036
Query: 648 gatcccagtgaggaacccgaatcaaagcattcaaaacagaattatgtaccaagatataca 707
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2035 gatcccagtgaggaacccgaacaaaagcattcaaaacagaattatgtaccaagatataca 1976
Query: 708 ccaggaaaacgtcctataaagcgcgctctacccaaaggggattatgtgcancctttggga 767
|||||||||||||||| || ||||||||||||||| |||||||||||| ||||| |||
Sbjct: 1975 ccaggaaaacgtcctagaagcggcgctctacccaaagtggattatgtgcacccttt-gga 1917
Query: 768 ttctatcagaagagctcatttgtagatctaaattggactatttctaaattggaatttgtt 827
| ||| |||||||||||| ||||||||||| ||||||||||| |||| || |||||||||
Sbjct: 1916 tccta-cagaagagctca-ttgtagatctagattggactattcctaagtt-gaatttgtt 1860
Query: 828 catcgcatttac 839
||||||||||||
Sbjct: 1859 catcgcatttac 1848
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7486
Number of Sequences: 1807
Number of extensions: 7486
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 890
length of database: 10,358,551
effective HSP length: 16
effective length of query: 874
effective length of database: 10,329,639
effective search space: 9028104486
effective search space used: 9028104486
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)