BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZB06FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1315 1251 0.0
>3x_Contig1315
Length = 8846
Score = 1251 bits (631), Expect = 0.0
Identities = 664/674 (98%), Gaps = 1/674 (0%)
Strand = Plus / Minus
Query: 85 tgatcatttggatttgacttatatacatctctactacgcgaaaggaattattaaaggtaa 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4940 tgatcatttggatttgacttatatacatctctactacgcgaaaggaattattaaaggtaa 4881
Query: 145 aatacacgcataaacaaaaacaatggcatctagtactgctgcagctggtatgacttcttc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4880 aatacacgcataaacaaaaacaatggcatctagtactgctgcagctggtatgacttcttc 4821
Query: 205 ttctgatgggttggctttggtaaatccatcttcttatgttgggtttgattcgattacttc 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4820 ttctgatgggttggctttggtaaatccatcttcttatgttgggtttgattcgattacttc 4761
Query: 265 acagattgaacatcgtttgttgaagagaggatttcaattcaacgttatggtcgttggaca 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4760 acagattgaacatcgtttgttgaagagaggatttcaattcaacgttatggtcgttggaca 4701
Query: 325 ttctggtctgggtaagagtactttgatcaacactttgtttgcatctcacttggttgattc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4700 ttctggtctgggtaagagtactttgatcaacactttgtttgcatctcacttggttgattc 4641
Query: 385 ttctactggtaaggacatcactcaggaaccaattagtaagaccaccgagatcaaggtttc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4640 ttctactggtaaggacatcactcaggaaccaattagtaagaccaccgagatcaaggtttc 4581
Query: 445 aacacattctttattggaagaccgtgtacgtttgaacgtgaacgtgattgacactccagg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4580 aacacattctttattggaagaccgtgtacgtttgaacgtgaacgtgattgacactccagg 4521
Query: 505 ttttggtgaccagataaataacgacaaagtttgggaacctattgtcaagtacatcaagga 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4520 ttttggtgaccagataaataacgacaaagtttgggaacctattgtcaagtacatcaagga 4461
Query: 565 gcaacactctcaatatttacgtaaagagttgactgctcaacgtgaaagacacattgtaga 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4460 gcaacactctcaatatttacgtaaagagttgactgctcaacgtgaaagacacattgtaga 4401
Query: 625 cactcgagtacatgcagtgntatatttcatccaacctaaacgtaaaggtctaacagaatc 684
||||||||||||||||||| |||||||||||||| |||| |||| ||||||||||||
Sbjct: 4400 cactcgagtacatgcagtgttatatttcatccaa-ctaacggtaagggtctaacagaact 4342
Query: 685 tgacgttgctgctttgaagagattgacagaaatcgctaatgttatccccgggatcgctaa 744
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 4341 tgacgttgctgctttgaagagattgacagaaatcgctaatgttatcccggtgatcgctaa 4282
Query: 745 agctgatcctttga 758
||||||| ||||||
Sbjct: 4281 agctgatactttga 4268
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7607
Number of Sequences: 1807
Number of extensions: 7607
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)