BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZB06RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1399 1463 0.0
>3x_Contig1399
Length = 7157
Score = 1463 bits (738), Expect = 0.0
Identities = 816/837 (97%), Gaps = 4/837 (0%)
Strand = Plus / Minus
Query: 43 tatctcgcaccccaatgtgatgggtctctacgaggtatgggaaaacaaatctgagttata 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4637 tatctcgcaccccaatgtgatgggtctctacgaggtatgggaaaacaaatctgagttata 4578
Query: 103 tttggtattggaatatgttgaaggtggtgaattgttcgactatttggtctcgaaggggaa 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4577 tttggtattggaatatgttgaaggtggtgaattgttcgactatttggtctcgaaggggaa 4518
Query: 163 gttgccggaaagtgaggctatccattatttcaaacagatagtacaagctgtatcatactg 222
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 4517 gttgccggaaagtgaggctatccattatttcaaacagatagtacaagctgtagcatactg 4458
Query: 223 ccatgggttcaatatttgtcatcgtgatttgaaaccagagaatttgcttttggataagaa 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4457 ccatgggttcaatatttgtcatcgtgatttgaaaccagagaatttgcttttggataagaa 4398
Query: 283 aaagagatctatcaagattgcagactttgggatggctgccctagagacttcggataaact 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4397 aaagagatctatcaagattgcagactttgggatggctgccctagagacttcggataaact 4338
Query: 343 gctggagacctcgtgtggctcaccacattatgcttctcctgaaatcgttctgggtcggaa 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4337 gctggagacctcgtgtggctcaccacattatgcttctcctgaaatcgttctgggtcggaa 4278
Query: 403 atatcatggatccccaagtgatgtttggtcctgtggtatcatcttgttcgccctgttgac 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4277 atatcatggatccccaagtgatgtttggtcctgtggtatcatcttgttcgccctgttgac 4218
Query: 463 tggacatttaccctttaacgacgataacgtcaagaaattgttgttgaaagtacagtcagg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4217 tggacatttaccctttaacgacgataacgtcaagaaattgttgttgaaagtacagtcagg 4158
Query: 523 ataatatcagatgccccaatggttatcggtagaggctaaagatttaatttctagaatcct 582
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4157 aaaatatcagatgccccaatggttatcggtagaggctaaagatttaatttctagaatcct 4098
Query: 583 ggtggtagatccaaatagaagaattactattgaccaaatcttacagcatgagttgctgac 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4097 ggtggtagatccaaatagaagaattactattgaccaaatcttacagcatgagttgctgac 4038
Query: 643 gaaatatgatcagaaatctcgcagtaagtctaatttcgatttgaatctgttgaatcgtac 702
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 4037 gaaatatgatcagaaatctcgcagtaagtctaattcggatttgaatctgttgaatcgtac 3978
Query: 703 tcc-aatattgtgagcttttcgtccgaaa-ggacatcgatgagacaatcttattc-acct 759
||| |||||||||||||||||||| |||| ||||||||||||||||||||||| | ||||
Sbjct: 3977 tccaaatattgtgagcttttcgtcggaaagggacatcgatgagacaatcttatccaacct 3918
Query: 760 acagatcctagggcacggtgctgcaaaaaaacatttgttgacaagacttttgaaaccagg 819
|||||||||| ||||||||||||||| ||||||||| ||||||||||| ||||||||||
Sbjct: 3917 acagatcctatggcacggtgctgcaaggaaacatttggtgacaagacttatgaaaccagg 3858
Query: 820 att-actgnagagaaaatgttttattctttcctttggaattttctggggaaacaaca 875
||| |||| ||||||||||||||||||||| || ||||||| || || |||||||||
Sbjct: 3857 attcactgaagagaaaatgttttattctttactatggaattatcaggagaaacaaca 3801
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6976
Number of Sequences: 1807
Number of extensions: 6976
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)