BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZB07FM1.SCF screened BAC_end
(863 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1790 1285 0.0
>3x_Contig1790
Length = 27369
Score = 1285 bits (648), Expect = 0.0
Identities = 763/784 (97%), Gaps = 13/784 (1%)
Strand = Plus / Plus
Query: 86 tcgcgcaggatcgattctcccactgtttctttttatctttcaatgaggttcctgcaagaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7548 tcgcgcaggatcgattctcccactgtttctttttatctttcaatgaggttcctgcaagaa 7607
Query: 146 acaactcactcattcctttttatttctatgagttttccgcacagaacaattcgcattaaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7608 acaactcactcattcctttttatttctatgagttttccgcacagaacaattcgcattaaa 7667
Query: 206 gtttaatacttcaacctagaagaatgccttgaggaacttcttgagacactttattatcgc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7668 gtttaatacttcaacctagaagaatgccttgaggaacttcttgagacactttattatcgc 7727
Query: 266 agatcgtagacgagagttcgtcttactttgtactgccggcacttgtcattcgaatggctt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7728 agatcgtagacgagagttcgtcttactttgtactgccggcacttgtcattcgaatggctt 7787
Query: 326 ttgaaaacagtcgcacaaagtaattactgtggacatgtagcgtacgaaccataatcaggc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7788 ttgaaaacagtcgcacaaagtaattactgtggacatgtagcgtacgaaccataatcaggc 7847
Query: 386 gataacgaagtaccaatattgttgtggcactattagccctgctgatcttggacacgtcta 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7848 gataacgaagtaccaatattgttgtggcactattagccctgctgatcttggacacgtcta 7907
Query: 446 cataatatttcacagggcacgtgatttggaatagctgtcaacactttacccacatgatga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7908 cataatatttcacagggcacgtgatttggaatagctgtcaacactttacccacatgatga 7967
Query: 506 ataatggttgcaccgtacttaaggcaactaggaaataatgcttcggttataaatgcctca 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7968 ataatggttgcaccgtacttaaggcaactaggaaataatgcttcggttataaatgcctca 8027
Query: 566 gcagatacaaaatattgaatatccaagttgatattctac-atacagagaaacctc-agga 623
||||||||||||||||||||||||||||||||| ||||| |||||||| |||||| ||||
Sbjct: 8028 gcagatacaaaatattgaatatccaagttgata-tctacaatacagag-aacctcaagga 8085
Query: 624 ttgatagatcctgctaaaatgagaataacggttggttaaggaatgttatttcgcagcgtt 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8086 ttgatagatcctgctaaaatgagaataacggttggttaaggaatgttatttcgcagcgtt 8145
Query: 684 ttatagctaaattttttc-atcggttctcaacttgttg-acagaaagctacgccgagaag 741
|||||||||||||||||| |||| |||||||||||||| |||||| ||||||||||||||
Sbjct: 8146 ttatagctaaattttttcaatcgtttctcaacttgttgaacagaaggctacgccgagaag 8205
Query: 742 gaag-acttcattctagtcaaatc-ggtcctgca-tttaaactatttttgatagtttctt 798
|||| ||| ||||||||||||||| ||| ||||| ||||||||||||||||| || |||
Sbjct: 8206 gaagaactacattctagtcaaatctggtactgcattttaaactatttttgatgtttcctt 8265
Query: 799 atttttgttcaataat-atgac-taaaga-catctgttaagcgtc-catgatcctttcat 854
|||||||||||||||| ||||| |||||| ||||||| ||||||| ||||||||||||||
Sbjct: 8266 atttttgttcaataataatgacttaaagaccatctgtaaagcgtcacatgatcctttcat 8325
Query: 855 gaaa 858
||||
Sbjct: 8326 gaaa 8329
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5911
Number of Sequences: 1807
Number of extensions: 5911
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 863
length of database: 10,358,551
effective HSP length: 16
effective length of query: 847
effective length of database: 10,329,639
effective search space: 8749204233
effective search space used: 8749204233
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)