BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC35ZB07RM1.SCF screened BAC_end
         (898 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1793                                                        1203   0.0  

>3x_Contig1793 
          Length = 40499

 Score = 1203 bits (607), Expect = 0.0
 Identities = 673/690 (97%), Gaps = 4/690 (0%)
 Strand = Plus / Plus

                                                                         
Query: 46    ctttttgaagtgacggtttggtggaggaacaaaacgacaaaactctatttaagccatcct 105
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12531 ctttttgaagtgacggtttggtggaggaacaaaacgacaaaactctatttaagccatcct 12590

                                                                         
Query: 106   gtaattttgttgtcgtcgttaactcttgcaaatgtttaacatcataattgatatctagct 165
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12591 gtaattttgttgtcgtcgttaactcttgcaaatgtttaacatcataattgatatctagct 12650

                                                                         
Query: 166   gtctttccaacaacttagaattccatccacccaaaatgattgttaaactttcacctgaaa 225
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12651 gtctttccaacaacttagaattccatccacccaaaatgattgttaaactttcacctgaaa 12710

                                                                         
Query: 226   caaataggtaatcaatatgtttggaagaatgaattgtctcataaactcctaaataatcat 285
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12711 caaataggtaatcaatatgtttggaagaatgaattgtctcataaactcctaaataatcat 12770

                                                                         
Query: 286   cgaattcagtttcattcgagttcatatagagatagccccaagtcattatagctagctcat 345
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12771 cgaattcagtttcattcgagttcatatagagatagccccaagtcattatagctagctcat 12830

                                                                         
Query: 346   cattgaatagcttgtcttttatggcatcctttattgaaatagttatggacttcctgttaa 405
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12831 cattgaatagcttgtcttttatggcatcctttattgaaatagttatggacttcctgttaa 12890

                                                                         
Query: 406   cagcatcaagcgaatccaaagttctatactttaaaagttcacaatatgctttcaaagaca 465
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12891 cagcatcaagcgaatccaaagttctatactttaaaagttcacaatatgctttcaaagaca 12950

                                                                         
Query: 466   actctctacaactaccagataaatattgctttggtatcttctgtaagattcttgaaacaa 525
             ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 12951 actctctacaactaccagataaatattgctttgttatcttctgtaagattcttgaaacaa 13010

                                                                         
Query: 526   cagttccaaattcaacagaatgtagtaactgcaatctggggattaaagatgccaaaaggt 585
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13011 cagttccaaattcaacagaatgtagtaactgcaatctggggattaaagatgccaaaaggt 13070

                                                                         
Query: 586   acactaaaacccgtattattgcngatggattattcgattcctgatcaaagtcagttgcca 645
             ||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 13071 acactaaaaccggtataattgcggatggattattcgattcctgatcaaagtcagttgcca 13130

                                                                         
Query: 646   gtattttgggacacagaatgtgaacattacccaaattctggcttccataattccccgatg 705
             ||| ||||||||||||||||||||| ||| || |||||| ||| | |||| ||||  |||
Sbjct: 13131 gta-tttgggacacagaatgtgaac-ttaacccaattcttgctccaataa-tcccgaatg 13187

                                           
Query: 706   aatttatcgagagaatccgtattgatgtca 735
             |||||| ||||||| ||||||| |||||||
Sbjct: 13188 aattta-cgagagagtccgtatagatgtca 13216


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7395
Number of Sequences: 1807
Number of extensions: 7395
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 898
length of database: 10,358,551
effective HSP length: 16
effective length of query: 882
effective length of database: 10,329,639
effective search space: 9110741598
effective search space used: 9110741598
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)