BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC35ZB07RM1.SCF screened BAC_end (898 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1793 1203 0.0 >3x_Contig1793 Length = 40499 Score = 1203 bits (607), Expect = 0.0 Identities = 673/690 (97%), Gaps = 4/690 (0%) Strand = Plus / Plus Query: 46 ctttttgaagtgacggtttggtggaggaacaaaacgacaaaactctatttaagccatcct 105 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12531 ctttttgaagtgacggtttggtggaggaacaaaacgacaaaactctatttaagccatcct 12590 Query: 106 gtaattttgttgtcgtcgttaactcttgcaaatgtttaacatcataattgatatctagct 165 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12591 gtaattttgttgtcgtcgttaactcttgcaaatgtttaacatcataattgatatctagct 12650 Query: 166 gtctttccaacaacttagaattccatccacccaaaatgattgttaaactttcacctgaaa 225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12651 gtctttccaacaacttagaattccatccacccaaaatgattgttaaactttcacctgaaa 12710 Query: 226 caaataggtaatcaatatgtttggaagaatgaattgtctcataaactcctaaataatcat 285 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12711 caaataggtaatcaatatgtttggaagaatgaattgtctcataaactcctaaataatcat 12770 Query: 286 cgaattcagtttcattcgagttcatatagagatagccccaagtcattatagctagctcat 345 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12771 cgaattcagtttcattcgagttcatatagagatagccccaagtcattatagctagctcat 12830 Query: 346 cattgaatagcttgtcttttatggcatcctttattgaaatagttatggacttcctgttaa 405 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12831 cattgaatagcttgtcttttatggcatcctttattgaaatagttatggacttcctgttaa 12890 Query: 406 cagcatcaagcgaatccaaagttctatactttaaaagttcacaatatgctttcaaagaca 465 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12891 cagcatcaagcgaatccaaagttctatactttaaaagttcacaatatgctttcaaagaca 12950 Query: 466 actctctacaactaccagataaatattgctttggtatcttctgtaagattcttgaaacaa 525 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 12951 actctctacaactaccagataaatattgctttgttatcttctgtaagattcttgaaacaa 13010 Query: 526 cagttccaaattcaacagaatgtagtaactgcaatctggggattaaagatgccaaaaggt 585 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13011 cagttccaaattcaacagaatgtagtaactgcaatctggggattaaagatgccaaaaggt 13070 Query: 586 acactaaaacccgtattattgcngatggattattcgattcctgatcaaagtcagttgcca 645 ||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 13071 acactaaaaccggtataattgcggatggattattcgattcctgatcaaagtcagttgcca 13130 Query: 646 gtattttgggacacagaatgtgaacattacccaaattctggcttccataattccccgatg 705 ||| ||||||||||||||||||||| ||| || |||||| ||| | |||| |||| ||| Sbjct: 13131 gta-tttgggacacagaatgtgaac-ttaacccaattcttgctccaataa-tcccgaatg 13187 Query: 706 aatttatcgagagaatccgtattgatgtca 735 |||||| ||||||| ||||||| ||||||| Sbjct: 13188 aattta-cgagagagtccgtatagatgtca 13216 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7395 Number of Sequences: 1807 Number of extensions: 7395 Number of successful extensions: 54 Number of sequences better than 1.0e-20: 1 length of query: 898 length of database: 10,358,551 effective HSP length: 16 effective length of query: 882 effective length of database: 10,329,639 effective search space: 9110741598 effective search space used: 9110741598 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)