BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC35ZB08FM1.SCF screened BAC_end
         (917 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1640                                                         932   0.0  

>3x_Contig1640 
          Length = 15521

 Score =  932 bits (470), Expect = 0.0
 Identities = 579/610 (94%), Gaps = 4/610 (0%)
 Strand = Plus / Minus

                                                                        
Query: 90   taccatctgcatgatacttggaggttcattcgattctggatcaattaacttcttttctcg 149
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2019 taccatctgcatgatacttggaggttcattcgattctggatcaattaacttcttttctcg 1960

                                                                        
Query: 150  catgatactgttaagattttccaaggattccacaatagatggatgggaatgaatctcgtc 209
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1959 catgatactgttaagattttccaaggattccacaatagatggatgggaatgaatctcgtc 1900

                                                                        
Query: 210  cataagtttctgttctttgacatgagcatccatatcctcgggtgatttgtcccatgacga 269
            ||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1899 cataagtgtctgtactttgacatgagcatccagatcctcgggtgatttgtcccatgacga 1840

                                                                        
Query: 270  agcatatctcttgttttgtagaagaggaatgattgttctacaacttctttgagcagtaac 329
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1839 agcatatctcttgttttgtagaagaggaatgattgttctacaacttctttgagcagtaac 1780

                                                                        
Query: 330  tgctccaaatgtggcagctcttagcccagaacggaatacagaacgcgataacatgttttc 389
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1779 tgctccaaatgtggcagctcttagcccagaacggaatacagaacgcgataacatgttttc 1720

                                                                        
Query: 390  tatatgaggattattgaagttccacagcaacaggaccggttaggtctcggatattctata 449
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1719 tatatgaggattattgaagttccacagcaacaggaccggttaggtctcggatattctata 1660

                                                                        
Query: 450  ttttcttaatttagtatgcaagcggaaagataattgcgctttcacatttttttgaaagtg 509
            || ||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 1659 ttgtctgaatttagtatgcaagcggaaagataattgcgctttcacatttttttgaagttg 1600

                                                                        
Query: 510  ataaaatttcagacccttacatgatggactgttatcgaacaagagtctgaaagtattaat 569
            ||||||||||||||| | ||||||||||||||||||||||| ||||||||| ||| ||||
Sbjct: 1599 ataaaatttcagaccttaacatgatggactgttatcgaacaggagtctgaaggtaataat 1540

                                                                        
Query: 570  tgaaagtgagcaccgactattttcatttgagcctgcattatat-aacaaattgaacttc- 627
            |||| ||||||||||||||||||||||||||| |||| ||||| ||||||| ||||| | 
Sbjct: 1539 tgaaggtgagcaccgactattttcatttgagcttgcaatatataaacaaatcgaactaca 1480

                                                                        
Query: 628  atgaattc-acaccctttgtaaagtatttacctttaattcaattcttaaattgggatatt 686
            |||||||| ||||| | |||| |||||||||| |  || | |||||| ||||| ||||||
Sbjct: 1479 atgaattcaacaccatctgtagagtatttaccatagatacgattctt-aattgtgatatt 1421

                      
Query: 687  ccaactttgg 696
             |||||||||
Sbjct: 1420 acaactttgg 1411


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8356
Number of Sequences: 1807
Number of extensions: 8356
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)