BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZB08RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1785 1021 0.0
>3x_Contig1785
Length = 37935
Score = 1021 bits (515), Expect = 0.0
Identities = 609/638 (95%), Gaps = 2/638 (0%)
Strand = Plus / Plus
Query: 47 gcttctggctgaggtggagtggtttggccttgagacttgaaccagttaccaggaacgacc 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16915 gcttctggctgaggtggagtggtttggccttgagacttgaaccagttaccaggaacgacc 16974
Query: 107 aatacacctgaagcgatggacctgtcaaagatagccttttcaactttttcaggatctgac 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16975 aatacacctgaagcgatggacctgtcaaagatagccttttcaactttttcaggatctgac 17034
Query: 167 ccgtacttggttgcaaattcgggatgcttggaagcgtcaatgttgacagtatttattata 226
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 17035 ccgtacttggttgcaaattcgggatgcttggaagcgtcaatgttgacagtaaagaacata 17094
Query: 227 ccagcgattggtggattaatcttgatgtaatcgacttgtggtaggtatttgtacaatgca 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17095 ccagcgattggtggattaatcttgatgtaatcgacttgtggtaggtatttgtacaatgca 17154
Query: 287 tcaatacaacagtcacgcttcttggtgtattcgtgtctcaaaccgatcaaccagtccaag 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17155 tcaatacaacagtcacgcttcttggtgtattcgtgtctcaaaccgatcaaccagtccaag 17214
Query: 347 tatccttcttgaccccagcggttcatggtaccagcgatgatcgattgagtgaaaccagca 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17215 tatccttcttgaccccagcggttcatggtaccagcgatgatcgattgagtgaaaccagca 17274
Query: 407 ggagcttggatggtcatttcttgtaaacttaagatacgggccaagatgtctttggcacca 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17275 ggagcttggatggtcatttcttgtaaacttaagatacgggccaagatgtctttggcacca 17334
Query: 467 acgatccaaccgaatcttgtacctggagctaagacctttgacanagaggtccatctttat 526
||||||||||||||||||||||||||||||| |||||| |||| |||| | ||||| ||
Sbjct: 17335 acgatccaaccgaatcttgtacctggagctaggaccttggacaaagagtccaatcttaat 17394
Query: 527 acacgtcccttcgagtcaatagagacaaaagaatttttccagttttgaatgaacttttta 586
|||||||||| | |||||||||||| ||||| |||| | ||||||||||||||| ||||
Sbjct: 17395 acacgtccctcggtgtcaatagagacgaaagatttttccaagttttgaatgaactcttta 17454
Query: 587 tgatcagcgtaagatttgacaaccctgtttgccggatctttttcgaatttttcccttttg 646
||||||||||| ||||||||||||||||||||||||||||||||| |||||| || ||||
Sbjct: 17455 tgatcagcgtaggatttgacaaccctgtttgccggatctttttcgtattttt-ccatttg 17513
Query: 647 caggaagtaatttgggtcaatcttcaatgataatgaaa 684
|| |||||| | ||| || |||||||||||||||||||
Sbjct: 17514 caagaagtagtatggttc-atcttcaatgataatgaaa 17550
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8799
Number of Sequences: 1807
Number of extensions: 8799
Number of successful extensions: 99
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)