BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZB10FM1.SCF screened BAC_end
(878 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig985 1384 0.0
>3x_Contig985
Length = 5529
Score = 1384 bits (698), Expect = 0.0
Identities = 774/790 (97%), Gaps = 7/790 (0%)
Strand = Plus / Plus
Query: 89 tttctcgtgaaatcaggcttttactcaaggcagctattgcgaaaggagctctgcataaaa 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3701 tttctcgtgaaatcaggcttttactcaaggcagctattgcgaaaggagctctgcataaaa 3760
Query: 149 atgattgggatcagcagcacttaacaagagtattttcagcgaaaactaacggaaatccaa 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3761 atgattgggatcagcagcacttaacaagagtattttcagcgaaaactaacggaaatccaa 3820
Query: 209 taaactcccaggaacggctatgctgtttcttatcccctgaagaaaaaagaattatcatag 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3821 taaactcccaggaacggctatgctgtttcttatcccctgaagaaaaaagaattatcatag 3880
Query: 269 atggcatcccatatgaacaacttggcattgaacgtccaaatgtatcaacatctaaagaca 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3881 atggcatcccatatgaacaacttggcattgaacgtccaaatgtatcaacatctaaagaca 3940
Query: 329 atactaacaattaccaagtgatagatcctacttcaatagtaacagttgaaacgcagtcaa 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3941 atactaacaattaccaagtgatagatcctacttcaatagtaacagttgaaacgcagtcaa 4000
Query: 389 aggtaccaccgccgcctcctccaattgattctaggccaaccccaccatgggctcagaatg 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4001 aggtaccaccgccgcctcctccaattgattctaggccaaccccaccatgggctcagaatg 4060
Query: 449 ttagaacagcagatcctttgctaaatcagcagatgaatcccaaagaatcaccggtaccgt 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4061 ttagaacagcagatcctttgctaaatcagcagatgaatcccaaagaatcaccggtaccgt 4120
Query: 509 cagtatcgttagaatctcgaatctcaaacttgaacgcaccaagcccttcccccgtaccca 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4121 cagtatcgttagaatctcgaatctcaaacttgaacgcaccaagcccttcccccgtaccca 4180
Query: 569 agaaaatagctgctcaagatgagaaaagcaggaggctggaaaggctaaagagatttgcta 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4181 agaaaatagctgctcaagatgagaaaagcaggaggctggaaaggctaaagagatttgcta 4240
Query: 629 gtcctgaaccactaacgtcaacctctataagagtgaagatagacgacgacgacagctatt 688
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 4241 gtcctgaaccactaacgtcaacctctaaaagagtgaagatagacgacgacgacagctatt 4300
Query: 689 ccgatctc-acgccatcactaac-aagcttattaaatttgac-agaacaagccgattg-g 744
|||||||| |||||||||||||| ||||||| |||||||||| ||||||||||||||| |
Sbjct: 4301 ccgatctcaacgccatcactaacaaagctta-taaatttgacaagaacaagccgattgtg 4359
Query: 745 gggcattgtcaagtgttagagaaaaaa-atttaagacttacttctgaaccagattcggca 803
||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 4360 gggcaatgtcaagtgttagagaaaaaatatttaagacttacttctgaaccagatccggca 4419
Query: 804 aaagtacgccccgtgtccatttatattaaagctcttgactgaattgtgaccaagtttcat 863
||||||||||| ||||||| | ||||||||||||||||| ||||||||||||||||||
Sbjct: 4420 aaagtacgcccgttgtccatgttaattaaagctcttgactggattgtgaccaagtttcat 4479
Query: 864 acgcggttcg 873
| ||||||||
Sbjct: 4480 a-gcggttcg 4488
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5488
Number of Sequences: 1807
Number of extensions: 5488
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 878
length of database: 10,358,551
effective HSP length: 16
effective length of query: 862
effective length of database: 10,329,639
effective search space: 8904148818
effective search space used: 8904148818
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)