BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZB10RM1.SCF screened BAC_end
(976 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1728 797 0.0
>3x_Contig1728
Length = 20685
Score = 797 bits (402), Expect = 0.0
Identities = 422/426 (99%), Gaps = 2/426 (0%)
Strand = Plus / Minus
Query: 51 gctttgacttagcacgaagattataatgtctagaacgtttttcttcctcaggaatgtgat 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gctttgacttagcacgaagattataatgtctagaacgtttttcttcctcaggaatgtgat 434
Query: 111 tctcggtgacatgtatgacatctggtcttgctttcttttcggcaggcttattccgttcat 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tctcggtgacatgtatgacatctggtcttgctttcttttcggcaggcttattccgttcat 374
Query: 171 tgagcatactcctttttctaggtttcggttttgcttcttcttctgaagcggttcctaaac 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tgagcatactcctttttctaggtttcggttttgcttcttcttctgaagcggttcctaaac 314
Query: 231 cctcctcatcctcatatttcattatcgtttcaagatcattctttgcgtccttgacgtagt 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cctcctcatcctcatatttcattatcgtttcaagatcattctttgcgtccttgacgtagt 254
Query: 291 tgattatatccttgaaatcgtccttgccatacattttctgaagatgggtcgttgatttcg 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tgattatatccttgaaatcgtccttgccatacattttctgaagatgggtcgttgatttcg 194
Query: 351 ttagggcggattcttcagctaccgaggttgccttcggcgtgtctttcgtaatttttttgt 410
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 193 ttagggcggattcttcagctaccgaggtttcgttcggcgtgtctttcgtaatttttttgt 134
Query: 411 cattatgttgtaagggtatcggcgaagccaaatagctatccttttggagtttttctttaa 470
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 133 cattatgttgtaagggtatcggcgaagccaaatagctatcc-tttggag-ttttctttaa 76
Query: 471 ctcttt 476
||||||
Sbjct: 75 ctcttt 70
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9319
Number of Sequences: 1807
Number of extensions: 9319
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 976
length of database: 10,358,551
effective HSP length: 16
effective length of query: 960
effective length of database: 10,329,639
effective search space: 9916453440
effective search space used: 9916453440
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)