BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC35ZB11FM1.SCF screened BAC_end
         (883 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1561                                                         305   8e-83

>3x_Contig1561 
          Length = 10959

 Score =  305 bits (154), Expect = 8e-83
 Identities = 204/213 (95%), Gaps = 6/213 (2%)
 Strand = Plus / Plus

                                                                         
Query: 83    tgtttaccagaatctgacaggctttcagatatcagtatattgcatgcagtagttgagaga 142
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10447 tgtttaccagaatctgacaggctttcagatatcagtatattgcatgcagtagttgagaga 10506

                                                                         
Query: 143   tggtttggtctgngatgtatcctataaggagtaatacnttatgtgtacgtaggagaagta 202
             |||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 10507 tggtttggtctg-gatgtatcctagaaggagtaatac-ttatgtgtacgtaggagaagta 10564

                                                                         
Query: 203   gccctggtagttcttgt-ttgtaccttgacgagttgttcgttgccgngagatgattttnt 261
             |||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 10565 gccctggtagttcttgtagtgtaccttgacgagttgttcgttgccg-gagatgattttct 10623

                                              
Query: 262   tgc-ggttcg-tttcaatgttgtattggccttg 292
             ||| |||||| ||||||||||||||||||||||
Sbjct: 10624 tgcaggttcgttttcaatgttgtattggccttg 10656


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 27,825
Number of Sequences: 1807
Number of extensions: 27825
Number of successful extensions: 2647
Number of sequences better than 1.0e-20: 1
length of query: 883
length of database: 10,358,551
effective HSP length: 16
effective length of query: 867
effective length of database: 10,329,639
effective search space: 8955797013
effective search space used: 8955797013
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)