BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC35ZB11FM1.SCF screened BAC_end (883 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1561 305 8e-83 >3x_Contig1561 Length = 10959 Score = 305 bits (154), Expect = 8e-83 Identities = 204/213 (95%), Gaps = 6/213 (2%) Strand = Plus / Plus Query: 83 tgtttaccagaatctgacaggctttcagatatcagtatattgcatgcagtagttgagaga 142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10447 tgtttaccagaatctgacaggctttcagatatcagtatattgcatgcagtagttgagaga 10506 Query: 143 tggtttggtctgngatgtatcctataaggagtaatacnttatgtgtacgtaggagaagta 202 |||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||| Sbjct: 10507 tggtttggtctg-gatgtatcctagaaggagtaatac-ttatgtgtacgtaggagaagta 10564 Query: 203 gccctggtagttcttgt-ttgtaccttgacgagttgttcgttgccgngagatgattttnt 261 ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| | Sbjct: 10565 gccctggtagttcttgtagtgtaccttgacgagttgttcgttgccg-gagatgattttct 10623 Query: 262 tgc-ggttcg-tttcaatgttgtattggccttg 292 ||| |||||| |||||||||||||||||||||| Sbjct: 10624 tgcaggttcgttttcaatgttgtattggccttg 10656 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 27,825 Number of Sequences: 1807 Number of extensions: 27825 Number of successful extensions: 2647 Number of sequences better than 1.0e-20: 1 length of query: 883 length of database: 10,358,551 effective HSP length: 16 effective length of query: 867 effective length of database: 10,329,639 effective search space: 8955797013 effective search space used: 8955797013 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)