BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZB11RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig921 1118 0.0
>3x_Contig921
Length = 3599
Score = 1118 bits (564), Expect = 0.0
Identities = 684/712 (96%), Gaps = 9/712 (1%)
Strand = Plus / Minus
Query: 43 gctttgttt-aaggtgtaacttttgaagtagttctaattgtacaggtgacaattttgctt 101
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2350 gctttgtttcaaggtgtaacttctgaagtagttctaattgtacaggtgacaattttgctt 2291
Query: 102 gcacttccggtgagaattgcaaaggtgtcgatccaagaactcccgggatttggccaggaa 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2290 gcacttccggtgagaattgcaaaggtgtcgatccaagaactcccgggatttggccaggaa 2231
Query: 162 tggatgatgtatttggcggagtttgtgagaggggcacgttcatttgtggctt-tgttgta 220
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 2230 tggatgatgtatttggcggagtttgtgagaggggcacgttcatttgtggctgatgttgca 2171
Query: 221 cagattgagcttggagatgtggtggagaaggtggtttagaccaagcgctatcacagaatg 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2170 cagattgagcttggagatgtggtggagaaggtggtttagaccaagcgctatcacagaatg 2111
Query: 281 gccttatcgtcaacgaatcagatgcaatgatgacactaccatttggacttggaactaaga 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2110 gccttatcgtcaacgaatcagatgcaatgatgacactaccatttggacttggaactaaga 2051
Query: 341 ccattgttctatcgaaggatttctgtgaaagtttgatgttcggcgtagacgtaaatccat 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2050 ccattgttctatcgaaggatttctgtgaaagtttgatgttcggcgtagacgtaaatccat 1991
Query: 401 ggttgtatctccttcctctagaggcagatgatccttgtgatgttttgctcttgtcaattt 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1990 ggttgtatctccttcctctagaggcagatgatccttgtgatgttttgctcttgtcaattt 1931
Query: 461 caggtttggcagtttcatcgaaatggccatgaagagtgataacaaacccttgaacttgtg 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1930 caggtttggcagtttcatcgaaatggccatgaagagtgataacaaacccttgaacttgtg 1871
Query: 521 ggaaggtccaggcttgcacagagtaagcatcaggttgttcttgc-aaaaatg-tttgtca 578
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 1870 ggaaggtccaggcttgcacagagtaagcatcaggttgttcttgcaaaaaatgttttgtca 1811
Query: 579 tagggagagatcccgacacttcat-aattgcttcgggccctatacgt-accgttcttgga 636
||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 1810 tagggagagatccgaacacttcataaattgcttcgggccctatacgtaaccgttcttgga 1751
Query: 637 ttgtcttgtcgctagatttcttggaatgttttcttg-aaatggtaagttatgacccgatg 695
| ||||||||||||||| |||||||| ||||||| ||||||||||| |||||| |||
Sbjct: 1750 tggtcttgtcgctagatatcttggaaatgtttcttgaaaatggtaagtaatgaccgaatg 1691
Query: 696 ttaggagtcgtttgaccattttgtccattagcagcttggaacgaaagaatca 747
|||||||||||||| |||| || || ||||||| ||||||| ||||||||
Sbjct: 1690 -taggagtcgtttgagcattaggtacagtagcagc-tggaacggaagaatca 1641
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6609
Number of Sequences: 1807
Number of extensions: 6609
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)